Mercurial > repos > iuc > raxml

annotate raxml.py @ 4:58a0f16c950c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
author iuc
date Tue, 27 Jun 2017 16:27:25 -0400
parents f5c449208763
children d38fcf1b83c5
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0
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
diff changeset
1 #!/usr/bin/env python
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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2 """
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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3 Runs RAxML on a sequence file.
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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4 For use with RAxML version 8.2.4
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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5 """
1
b0d6eb76ad87 planemo upload for repository https://github.com/stamatak/standard-RAxML commit 80c5ab90ac30fe083328ef7ad507d2e578daea90
iuc
parents: 0
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6 import fnmatch
b0d6eb76ad87 planemo upload for repository https://github.com/stamatak/standard-RAxML commit 80c5ab90ac30fe083328ef7ad507d2e578daea90
iuc
parents: 0
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7 import glob
b0d6eb76ad87 planemo upload for repository https://github.com/stamatak/standard-RAxML commit 80c5ab90ac30fe083328ef7ad507d2e578daea90
iuc
parents: 0
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8 import optparse
0
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
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9
1
b0d6eb76ad87 planemo upload for repository https://github.com/stamatak/standard-RAxML commit 80c5ab90ac30fe083328ef7ad507d2e578daea90
iuc
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10
0
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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11 def getint(name):
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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12 basename = name.partition('RUN.')
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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13 if basename[2] != '':
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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14 num = basename[2]
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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15 return int(num)
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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16
1
b0d6eb76ad87 planemo upload for repository https://github.com/stamatak/standard-RAxML commit 80c5ab90ac30fe083328ef7ad507d2e578daea90
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17
0
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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18 def __main__():
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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19 # Parse the primary wrapper's command line options
4
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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20 parser = optparse.OptionParser()
0
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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21 # (-b)
4
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
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parents: 3
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22 parser.add_option("--bootseed", action="store", type="int", dest="bootseed", help="Random number for non-parametric bootstrapping")
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934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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23 # (-N/#)
4
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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24 parser.add_option("--number_of_runs", action="store", type="int", dest="number_of_runs", default=1, help="Number of alternative runs")
0
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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25 # (-q)
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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26 parser.add_option("--multiple_model", action="store", type="string", dest="multiple_model", help="Multiple Model File")
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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27 # (-x)
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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28 parser.add_option("--rapid_bootstrap_random_seed", action="store", type="int", dest="rapid_bootstrap_random_seed", help="Rapid Boostrap Random Seed")
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
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29
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
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30 (options, args) = parser.parse_args()
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
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31
1
b0d6eb76ad87 planemo upload for repository https://github.com/stamatak/standard-RAxML commit 80c5ab90ac30fe083328ef7ad507d2e578daea90
iuc
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32 # Multiple runs - concatenate
4
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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33 if options.number_of_runs > 1:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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34 if options.bootseed is None and options.rapid_bootstrap_random_seed is None:
0
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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35 runfiles = glob.glob('RAxML*RUN*')
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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36 runfiles.sort(key=getint)
4
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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37 # Logs
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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38 with open('RAxML_log.galaxy', 'w') as outfile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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39 for filename in runfiles:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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40 if fnmatch.fnmatch(filename, 'RAxML_log.galaxy.RUN.*'):
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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41 with open(filename, 'r') as infile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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42 filename_line = "%s\n" % filename
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
diff changeset
43 outfile.write(filename_line)
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
diff changeset
44 for line in infile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
diff changeset
45 outfile.write(line)
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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46 # Parsimony Trees
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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47 with open('RAxML_parsimonyTree.galaxy', 'w') as outfile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
diff changeset
48 for filename in runfiles:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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49 if fnmatch.fnmatch(filename, 'RAxML_parsimonyTree.galaxy.RUN.*'):
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
diff changeset
50 with open(filename, 'r') as infile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
diff changeset
51 filename_line = "%s\n" % filename
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
diff changeset
52 outfile.write(filename_line)
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
diff changeset
53 for line in infile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
diff changeset
54 outfile.write(line)
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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55 # Results
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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56 with open('RAxML_result.galaxy', 'w') as outfile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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57 for filename in runfiles:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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58 if fnmatch.fnmatch(filename, 'RAxML_result.galaxy.RUN.*'):
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
diff changeset
59 with open(filename, 'r') as infile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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60 filename_line = "%s\n" % filename
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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61 outfile.write(filename_line)
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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62 for line in infile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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63 outfile.write(line)
0
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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64 # Multiple Model Partition Files
4
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
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parents: 3
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65 if options.multiple_model:
0
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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66 files = glob.glob('RAxML_bestTree.galaxy.PARTITION.*')
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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67 if len(files) > 0:
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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68 files.sort(key=getint)
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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69 # Best Tree Partitions
4
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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70 with open('RAxML_bestTreePartitions.galaxy', 'w') as outfile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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71 for filename in files:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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72 if fnmatch.fnmatch(filename, 'RAxML_bestTree.galaxy.PARTITION.*'):
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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73 with open(filename, 'r') as infile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
diff changeset
74 filename_line = "%s\n" % filename
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
diff changeset
75 outfile.write(filename_line)
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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76 for line in infile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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77 outfile.write(line)
0
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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78 else:
4
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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79 with open('RAxML_bestTreePartitions.galaxy', 'w') as outfile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
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parents: 3
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80 outfile.write("No partition files were produced.\n")
0
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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81
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
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82 # Result Partitions
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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83 files = glob.glob('RAxML_result.galaxy.PARTITION.*')
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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84 if len(files) > 0:
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
parents:
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85 files.sort(key=getint)
4
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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86 with open('RAxML_resultPartitions.galaxy', 'w') as outfile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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87 for filename in files:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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88 if fnmatch.fnmatch(filename, 'RAxML_result.galaxy.PARTITION.*'):
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
diff changeset
89 with open(filename, 'r') as infile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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90 filename_line = "%s\n" % filename
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
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91 outfile.write(filename_line)
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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92 for line in infile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
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93 outfile.write(line)
0
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
iuc
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94 else:
4
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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95 with open('RAxML_resultPartitions.galaxy', 'w') as outfile:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
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96 outfile.write("No partition files were produced.\n")
0
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
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97
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
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98 # DEBUG options
4
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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99 with open('RAxML_info.galaxy', 'a') as infof:
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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100 infof.write('\nOM: CLI options DEBUG START:\n')
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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101 infof.write(options.__repr__())
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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102 infof.write('\nOM: CLI options DEBUG END\n')
58a0f16c950c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raxml commit b23553a3d29d50e05d8b37a5c5780e3ffc937069
iuc
parents: 3
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103
0
934206441123 planemo upload for repository https://github.com/stamatak/standard-RAxML commit baa6a1ec8b3c440cdf73409ccaafcd303e9f4e72
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104
1
b0d6eb76ad87 planemo upload for repository https://github.com/stamatak/standard-RAxML commit 80c5ab90ac30fe083328ef7ad507d2e578daea90
iuc
parents: 0
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105 if __name__ == "__main__":
b0d6eb76ad87 planemo upload for repository https://github.com/stamatak/standard-RAxML commit 80c5ab90ac30fe083328ef7ad507d2e578daea90
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106 __main__()