Mercurial > repos > iuc > query_tabular
annotate macros.xml @ 12:504f24a8eb76 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
| author | iuc |
|---|---|
| date | Sat, 19 Jun 2021 14:13:01 +0000 |
| parents | 4903740da8bc |
| children | b972f6137887 |
| rev | line source |
|---|---|
|
0
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
1 <macros> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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2 <token name="@LINEFILTERS@"> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
3 <![CDATA[ |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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4 ## set linefilters to the |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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5 #set $input_filters = [] |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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6 #for $fi in $linefilters: |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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7 #if $fi.filter.filter_type == 'skip': |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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8 #set $skip_lines = None |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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9 #if str($fi.filter.skip_lines) != '': |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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10 #set $skip_lines = int($fi.filter.skip_lines) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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11 #elif $tbl.table.metadata.comment_lines and $tbl.table.metadata.comment_lines > 0: |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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12 #set $skip_lines = int($tbl.table.metadata.comment_lines) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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13 #end if |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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14 #if $skip_lines is not None: |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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15 #set $filter_dict = dict() |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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16 #set $filter_dict['filter'] = str($fi.filter.filter_type) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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17 #set $filter_dict['count'] = $skip_lines |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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18 #silent $input_filters.append($filter_dict) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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19 #end if |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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20 #elif $fi.filter.filter_type == 'comment': |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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21 #set $filter_dict = dict() |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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22 #set $filter_dict['filter'] = 'regex' |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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23 #set $filter_dict['pattern'] = '^(%s).*$' % '|'.join([chr(int(x)).replace('|','[|]') for x in (str($fi.filter.comment_char)).split(',')]) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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24 #set $filter_dict['action'] = 'exclude_match' |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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25 #silent $input_filters.append($filter_dict) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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26 #elif $fi.filter.filter_type == 'regex': |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
27 #set $filter_dict = dict() |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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28 #set $filter_dict['filter'] = str($fi.filter.filter_type) |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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29 #set $filter_dict['pattern'] = str($fi.filter.regex_pattern) |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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30 #set $filter_dict['action'] = str($fi.filter.regex_action) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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31 #silent $input_filters.append($filter_dict) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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32 #elif $fi.filter.filter_type == 'select_columns': |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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33 #set $filter_dict = dict() |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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34 #set $filter_dict['filter'] = str($fi.filter.filter_type) |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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35 #set $filter_dict['columns'] = [int(str($ci).replace('c','')) for $ci in str($fi.filter.columns).split(',')] |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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36 #silent $input_filters.append($filter_dict) |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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37 #elif $fi.filter.filter_type == 'replace': |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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38 #set $filter_dict = dict() |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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39 #set $filter_dict['filter'] = str($fi.filter.filter_type) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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40 #set $filter_dict['column'] = int(str($fi.filter.column).replace('c','')) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
41 #set $filter_dict['pattern'] = str($fi.filter.regex_pattern) |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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42 #set $filter_dict['replace'] = str($fi.filter.regex_replace) |
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9
4903740da8bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents:
8
diff
changeset
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43 #if $fi.filter.add: |
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4903740da8bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents:
8
diff
changeset
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44 #set $filter_dict['add'] = str($fi.filter.add) |
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4903740da8bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents:
8
diff
changeset
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45 #end if |
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0
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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46 #silent $input_filters.append($filter_dict) |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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47 #elif str($fi.filter.filter_type).endswith('pend_line_num'): |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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48 #set $filter_dict = dict() |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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49 #set $filter_dict['filter'] = str($fi.filter.filter_type) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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50 #silent $input_filters.append($filter_dict) |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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51 #elif str($fi.filter.filter_type).endswith('pend_text'): |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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52 #set $filter_dict = dict() |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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53 #set $filter_dict['filter'] = str($fi.filter.filter_type) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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54 #set $filter_dict['column_text'] = str($fi.filter.column_text) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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55 #silent $input_filters.append($filter_dict) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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56 #elif $fi.filter.filter_type == 'normalize': |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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57 #set $filter_dict = dict() |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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58 #set $filter_dict['filter'] = str($fi.filter.filter_type) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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59 #set $filter_dict['columns'] = [int(str($ci).replace('c','')) for $ci in str($fi.filter.columns).split(',')] |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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60 #set $filter_dict['separator'] = str($fi.filter.separator) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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61 #silent $input_filters.append($filter_dict) |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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62 #end if |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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63 #end for |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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64 ]]> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
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65 </token> |
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1
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
0
diff
changeset
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66 <token name="@RESULT_HEADER@"> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
0
diff
changeset
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67 <![CDATA[ |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
0
diff
changeset
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68 #if $query_result.header == 'yes': |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
0
diff
changeset
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69 #if $query_result.header_prefix: |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
0
diff
changeset
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70 #set $header_prefix = chr(int(str($query_result.header_prefix))) |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
0
diff
changeset
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71 --comment_char='$header_prefix' |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
0
diff
changeset
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72 #end if |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
0
diff
changeset
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73 #else |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
0
diff
changeset
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74 --no_header |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents:
0
diff
changeset
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75 #end if |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
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|
76 ]]> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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|
77 </token> |
|
8
5c3d86bc259c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 1647065a8e6e8d8c98cd0d2194b695fb9425f541"
iuc
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|
78 <xml name="requirements"> |
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5c3d86bc259c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 1647065a8e6e8d8c98cd0d2194b695fb9425f541"
iuc
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|
79 <requirements> |
|
5c3d86bc259c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 1647065a8e6e8d8c98cd0d2194b695fb9425f541"
iuc
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|
80 <requirement type="package" version="3.7">python</requirement> |
|
5c3d86bc259c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 1647065a8e6e8d8c98cd0d2194b695fb9425f541"
iuc
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|
81 </requirements> |
|
5c3d86bc259c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 1647065a8e6e8d8c98cd0d2194b695fb9425f541"
iuc
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diff
changeset
|
82 </xml> |
|
1
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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diff
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|
83 <xml name="comment_char_options"> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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changeset
|
84 <option value="62">></option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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diff
changeset
|
85 <option value="64">@</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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diff
changeset
|
86 <option value="43">+</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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diff
changeset
|
87 <option value="60"><</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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changeset
|
88 <option value="42">*</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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changeset
|
89 <option value="45">-</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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diff
changeset
|
90 <option value="61">=</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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diff
changeset
|
91 <option value="124">|</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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changeset
|
92 <option value="63">?</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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diff
changeset
|
93 <option value="36">$</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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diff
changeset
|
94 <option value="46">.</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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diff
changeset
|
95 <option value="58">:</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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|
96 <option value="38">&</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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changeset
|
97 <option value="37">%</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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98 <option value="94">^</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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99 <option value="35" selected="true">#</option> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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|
100 <option value="33">!</option> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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101 </xml> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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102 <xml name="result_results_header_line"> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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103 <conditional name="query_result"> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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104 <param name="header" type="select" label="include query result column headers"> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
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105 <option value="yes">Yes</option> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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106 <option value="no">No</option> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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107 </param> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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108 <when value="yes"> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
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109 <param name="header_prefix" type="select" optional="true" label="Prefix character for column_header line"> |
|
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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110 <option value="">no comment character prefix</option> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
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111 <expand macro="comment_char_options" /> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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112 </param> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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113 </when> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
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114 <when value="no"/> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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115 </conditional> |
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53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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116 </xml> |
|
4
7be49fd649f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 6a362345c31764c28bb6328da1f0d81ef8f35d40
iuc
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117 <xml name="sql_query_input"> |
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7be49fd649f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 6a362345c31764c28bb6328da1f0d81ef8f35d40
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118 <param name="sqlquery" type="text" area="true" size="20x80" value="" optional="true" label="SQL Query to generate tabular output"> |
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7be49fd649f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 6a362345c31764c28bb6328da1f0d81ef8f35d40
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119 <help>By default: tables are named: t1,t2,...,tn and columns in each table: c1,c2,...,cn</help> |
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7be49fd649f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 6a362345c31764c28bb6328da1f0d81ef8f35d40
iuc
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120 <sanitizer sanitize="False"/> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 6a362345c31764c28bb6328da1f0d81ef8f35d40
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121 <validator type="regex" message="">^(?ims)\s*select\s+.*\s+from\s+.*$</validator> |
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7be49fd649f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 6a362345c31764c28bb6328da1f0d81ef8f35d40
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122 </param> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 6a362345c31764c28bb6328da1f0d81ef8f35d40
iuc
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123 </xml> |
|
0
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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124 <xml name="macro_line_filters"> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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125 <repeat name="linefilters" title="Filter Tabular Input Lines"> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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126 <conditional name="filter"> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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127 <param name="filter_type" type="select" label="Filter By"> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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128 <option value="skip">skip leading lines</option> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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129 <option value="comment">comment char</option> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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130 <option value="regex">by regex expression matching</option> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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131 <option value="select_columns">select columns</option> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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132 <option value="replace">regex replace value in column</option> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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133 <option value="prepend_line_num">prepend a line number column</option> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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134 <option value="append_line_num">append a line number column</option> |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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135 <option value="prepend_text">prepend a column with the given text</option> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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136 <option value="append_text">append a column with the given text</option> |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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137 <option value="normalize">normalize list columns, replicates row for each item in list</option> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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138 </param> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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139 <when value="skip"> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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140 <param name="skip_lines" type="integer" value="" min="0" optional="true" label="Skip lines" |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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141 help="Leave blank to use the comment lines metadata for this dataset" /> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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142 </when> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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143 <when value="comment"> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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144 <param name="comment_char" type="select" display="checkboxes" multiple="True" label="Ignore lines beginning with these characters" help="lines beginning with these are skipped"> |
|
1
53c9f76c0788
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
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145 <expand macro="comment_char_options" /> |
|
0
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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146 </param> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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147 </when> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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148 <when value="prepend_line_num"/> |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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149 <when value="append_line_num"/> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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150 <when value="prepend_text"> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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151 <param name="column_text" type="text" value="" label="text for column"> |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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152 </param> |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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153 </when> |
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154 <when value="append_text"> |
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155 <param name="column_text" type="text" value="" label="text for column"> |
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156 </param> |
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157 </when> |
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158 <when value="regex"> |
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159 <param name="regex_pattern" type="text" value="" label="regex pattern"> |
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160 <sanitizer sanitize="False"/> |
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161 </param> |
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162 <param name="regex_action" type="select" label="action for regex match"> |
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163 <option value="exclude_match">exclude line on pattern match</option> |
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81ad914a0b08
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164 <option value="include_match">include line on pattern match</option> |
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81ad914a0b08
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165 <option value="exclude_find">exclude line if pattern found</option> |
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81ad914a0b08
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166 <option value="include_find">include line if pattern found</option> |
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81ad914a0b08
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167 </param> |
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168 </when> |
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169 <when value="select_columns"> |
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170 <param name="columns" type="text" value="" label="enter column numbers to keep" |
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171 help="example: 1,4,2 or c1,c4,c2(selects the first,fourth, and second columns)"> |
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172 <validator type="regex" message="Column ordinal positions separated by commas">^(c?[1-9]\d*)(,c?[1-9]\d*)*$</validator> |
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81ad914a0b08
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173 </param> |
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174 </when> |
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175 <when value="replace"> |
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176 <param name="column" type="text" value="" label="enter column number to replace" |
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177 help="example: 1 or c1 (selects the first column)"> |
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9
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
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178 <validator type="regex" message="Column ordinal position">^(c?[1-9]\d*)$</validator> |
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0
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179 </param> |
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180 <param name="regex_pattern" type="text" value="" label="regex pattern"> |
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181 <sanitizer sanitize="False"/> |
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182 </param> |
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183 <param name="regex_replace" type="text" value="" label="replacement expression"> |
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184 <sanitizer sanitize="False"/> |
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185 </param> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
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186 <param name="add" type="select" optional="true" label="Instead of replacing, Add as new column:"> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
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187 <option value="prepend">prepend to beginning of row</option> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
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188 <option value="append">append to the end of row</option> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
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189 <option value="before">insert before column field</option> |
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4903740da8bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
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190 <option value="after">insert after column field</option> |
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4903740da8bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
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191 </param> |
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0
81ad914a0b08
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192 </when> |
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193 <when value="normalize"> |
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194 <param name="columns" type="text" value="" label="enter column numbers to normalize"> |
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195 <help><![CDATA[ |
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196 example: 2,4 or c2,c4 (selects the second, and fourth columns) |
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197 If multiple columns are selected, they should have the same length and separator on each line |
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198 ]]></help> |
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199 <validator type="regex" message="Column ordinal positions separated by commas">^(c?[1-9]\d*)(,c?[1-9]\d*)*$</validator> |
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200 </param> |
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201 <param name="separator" type="text" value="," label="List item delimiter in column"> |
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202 <sanitizer sanitize="False"/> |
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203 <validator type="regex" message="Anything but TAB or Newline">^[^\t\n\r\f\v]+$</validator> |
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204 </param> |
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205 </when> |
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206 </conditional> |
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207 </repeat> |
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208 </xml> |
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209 |
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210 <token name="@LINEFILTERS_HELP@"> |
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211 <![CDATA[ |
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212 **Input Line Filters** |
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213 |
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214 As a tabular file is being read, line filters may be applied. |
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215 |
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216 :: |
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217 |
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218 - skip leading lines skip the first *number* of lines |
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219 - comment char omit any lines that start with the specified comment character |
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220 - by regex expression matching *include/exclude* lines the match the regex expression |
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221 - select columns choose to include only selected columns in the order specified |
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222 - regex replace value in column replace a field in a column using a regex substitution (good for date reformatting) |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
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223 - regex replace value in column add a new column using a regex substitution of a column value |
|
0
81ad914a0b08
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224 - prepend a line number column each line has the ordinal value of the line read by this filter as the first column |
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225 - append a line number column each line has the ordinal value of the line read by this filter as the last column |
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81ad914a0b08
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226 - prepend a text column each line has the text string as the first column |
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81ad914a0b08
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227 - append a text column each line has the text string as the last column |
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81ad914a0b08
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228 - normalize list columns replicates the line for each item in the specified list *columns* |
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229 ]]> |
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230 </token> |
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231 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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232 <token name="@LINEFILTERS_HELP_EXAMPLE@"> |
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233 <![CDATA[ |
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234 **Line Filtering Example** |
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235 *(Six filters are applied as the following file is read)* |
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236 |
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237 :: |
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238 |
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239 Input Tabular File: |
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240 |
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241 #People with pets |
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242 Pets FirstName LastName DOB PetNames PetType |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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243 2 Paula Brown 24/05/78 Rex,Fluff dog,cat |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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244 1 Steven Jones 04/04/74 Allie cat |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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245 0 Jane Doe 24/05/78 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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246 1 James Smith 20/10/80 Spot |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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247 |
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248 |
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249 Filter 1 - append a line number column: |
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250 |
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251 #People with pets 1 |
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252 Pets FirstName LastName DOB PetNames PetType 2 |
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253 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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254 1 Steven Jones 04/04/74 Allie cat 4 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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255 0 Jane Doe 24/05/78 5 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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256 1 James Smith 20/10/80 Spot 6 |
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257 |
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258 Filter 2 - by regex expression matching [include]: '^\d+' (include lines that start with a number) |
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259 |
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260 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3 |
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261 1 Steven Jones 04/04/74 Allie cat 4 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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262 0 Jane Doe 24/05/78 5 |
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263 1 James Smith 20/10/80 Spot 6 |
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264 |
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265 Filter 3 - append a line number column: |
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266 |
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267 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3 1 |
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268 1 Steven Jones 04/04/74 Allie cat 4 2 |
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269 0 Jane Doe 24/05/78 5 3 |
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270 1 James Smith 20/10/80 Spot 6 4 |
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271 |
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272 Filter 4 - regex replace value in column[4]: '(\d+)/(\d+)/(\d+)' '19\3-\2-\1' (convert dates to sqlite format) |
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273 |
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274 2 Paula Brown 1978-05-24 Rex,Fluff dog,cat 3 1 |
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81ad914a0b08
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275 1 Steven Jones 1974-04-04 Allie cat 4 2 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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276 0 Jane Doe 1978-05-24 5 3 |
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277 1 James Smith 1980-10-20 Spot 6 4 |
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278 |
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279 Filter 5 - normalize list columns[5,6]: |
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280 |
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281 2 Paula Brown 1978-05-24 Rex dog 3 1 |
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282 2 Paula Brown 1978-05-24 Fluff cat 3 1 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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283 1 Steven Jones 1974-04-04 Allie cat 4 2 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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284 0 Jane Doe 1978-05-24 5 3 |
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285 1 James Smith 1980-10-20 Spot 6 4 |
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286 |
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287 Filter 6 - append a line number column: |
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288 |
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289 2 Paula Brown 1978-05-24 Rex dog 3 1 1 |
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290 2 Paula Brown 1978-05-24 Fluff cat 3 1 2 |
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291 1 Steven Jones 1974-04-04 Allie cat 4 2 3 |
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292 0 Jane Doe 1978-05-24 5 3 4 |
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293 1 James Smith 1980-10-20 Spot 6 4 5 |
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294 |
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295 ]]> |
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296 </token> |
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297 |
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298 <token name="@QUERY_HELP@"> |
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299 <![CDATA[ |
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300 |
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301 For help in using SQLite_ see: http://www.sqlite.org/docs.html |
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302 |
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303 **NOTE:** input for SQLite dates input field must be in the format: *YYYY-MM-DD* for example: 2015-09-30 |
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304 |
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305 See: http://www.sqlite.org/lang_datefunc.html |
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306 |
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307 **Example** |
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308 |
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309 Given 2 tabular datasets: *customers* and *sales* |
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310 |
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311 Dataset *customers* |
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312 |
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313 Table name: "customers" |
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314 |
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315 Column names: "CustomerID,FirstName,LastName,Email,DOB,Phone" |
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316 |
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317 =========== ========== ========== ===================== ========== ============ |
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318 #CustomerID FirstName LastName Email DOB Phone |
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319 =========== ========== ========== ===================== ========== ============ |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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320 1 John Smith John.Smith@yahoo.com 1968-02-04 626 222-2222 |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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321 2 Steven Goldfish goldfish@fishhere.net 1974-04-04 323 455-4545 |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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322 3 Paula Brown pb@herowndomain.org 1978-05-24 416 323-3232 |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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323 4 James Smith jim@supergig.co.uk 1980-10-20 416 323-8888 |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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324 =========== ========== ========== ===================== ========== ============ |
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325 |
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326 Dataset *sales* |
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327 |
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328 Table name: "sales" |
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329 |
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330 Column names: "CustomerID,Date,SaleAmount" |
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331 |
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332 ============= ============ ============ |
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333 #CustomerID Date SaleAmount |
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334 ============= ============ ============ |
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335 2 2004-05-06 100.22 |
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336 1 2004-05-07 99.95 |
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337 3 2004-05-07 122.95 |
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338 3 2004-05-13 100.00 |
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339 4 2004-05-22 555.55 |
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340 ============= ============ ============ |
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341 |
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342 The query |
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343 |
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344 :: |
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345 |
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346 SELECT FirstName,LastName,sum(SaleAmount) as "TotalSales" |
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347 FROM customers join sales on customers.CustomerID = sales.CustomerID |
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348 GROUP BY customers.CustomerID ORDER BY TotalSales DESC; |
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349 |
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350 Produces this tabular output: |
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351 |
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352 ========== ======== ========== |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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353 #FirstName LastName TotalSales |
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354 ========== ======== ========== |
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355 James Smith 555.55 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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356 Paula Brown 222.95 |
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357 Steven Goldfish 100.22 |
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358 John Smith 99.95 |
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359 ========== ======== ========== |
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360 |
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361 |
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362 If the optional Table name and Column names inputs are not used, the query would be: |
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363 |
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364 :: |
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365 |
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366 SELECT t1.c2 as "FirstName", t1.c3 as "LastName", sum(t2.c3) as "TotalSales" |
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367 FROM t1 join t2 on t1.c1 = t2.c1 |
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368 GROUP BY t1.c1 ORDER BY TotalSales DESC; |
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369 |
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370 You can selectively name columns, e.g. on the customers input you could just name columns 2,3, and 5: |
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371 |
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372 Column names: ,FirstName,LastName,,BirthDate |
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373 |
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374 Results in the following data base table |
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375 |
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376 =========== ========== ========== ===================== ========== ============ |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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377 #c1 FirstName LastName c4 BirthDate c6 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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378 =========== ========== ========== ===================== ========== ============ |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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379 1 John Smith John.Smith@yahoo.com 1968-02-04 626 222-2222 |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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380 2 Steven Goldfish goldfish@fishhere.net 1974-04-04 323 455-4545 |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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381 3 Paula Brown pb@herowndomain.org 1978-05-24 416 323-3232 |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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382 4 James Smith jim@supergig.co.uk 1980-10-20 416 323-8888 |
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81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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383 =========== ========== ========== ===================== ========== ============ |
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384 |
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385 |
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12
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
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386 |
|
0
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387 Regular_expression_ functions are included for: |
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388 |
|
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389 :: |
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390 |
|
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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391 matching: re_match('pattern',column) |
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392 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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393 SELECT t1.FirstName, t1.LastName |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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394 FROM t1 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
395 WHERE re_match('^.*\.(net|org)$',c4) |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
396 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
397 Results: |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
398 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
399 =========== ========== |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
400 #FirstName LastName |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
401 =========== ========== |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
402 Steven Goldfish |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
403 Paula Brown |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
404 =========== ========== |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
405 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
406 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
407 :: |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
408 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
409 searching: re_search('pattern',column) |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
410 substituting: re_sub('pattern','replacement,column) |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
411 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
412 SELECT t1.FirstName, t1.LastName, re_sub('^\d{2}(\d{2})-(\d\d)-(\d\d)','\3/\2/\1',BirthDate) as "DOB" |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
413 FROM t1 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
414 WHERE re_search('[hp]er',c4) |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
415 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
416 Results: |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
417 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
418 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
419 =========== ========== ========== |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
420 #FirstName LastName DOB |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
421 =========== ========== ========== |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
422 Steven Goldfish 04/04/74 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
423 Paula Brown 24/05/78 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
424 James Smith 20/10/80 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
425 =========== ========== ========== |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
426 |
|
12
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
427 Math_ functions *( python math library: https://docs.python.org/3.6/library/math.html )*: |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
428 |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
429 acos(x), acosh(x), asin(x), asinh(x), atan(x), atanh(x), atan2(x, y), ceil(x), cos(x), cosh(x), degrees(x), exp(x), expm1(x), fabs(x), floor(x), fmod(x, y), log(b,x), log(x), log10(x), log1p(x), log2(x), mod(x, y), pow(x, y), radians(x), sin(x), sinh(x), sqrt(x), tan(x), tanh(x), trunc(x) |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
430 |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
431 |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
432 :: |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
433 |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
434 Query: |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
435 |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
436 SELECT SaleAmount, floor(SaleAmount) as "dollars" |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
437 FROM sales |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
438 |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
439 Results: |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
440 |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
441 ============ ======== |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
442 SaleAmount dollars |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
443 ============ ======== |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
444 100.22 100 |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
445 99.95 99 |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
446 122.95 122 |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
447 100.00 100 |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
448 555.55 555 |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
449 ============ ======== |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
450 |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
451 |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
452 .. _Regular_expression: https://docs.python.org/3.9/library/re.html |
|
504f24a8eb76
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4fd70e184fca17ad430c30eb286127c4a198ef11"
iuc
parents:
9
diff
changeset
|
453 .. _Math: https://docs.python.org/3.9/library/math.html |
|
0
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
454 .. _SQLite: http://www.sqlite.org/index.html |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
455 .. _SQLite_functions: http://www.sqlite.org/docs.html |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
456 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
457 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
458 ]]> |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
459 </token> |
|
6
5b557716b4b3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9
iuc
parents:
4
diff
changeset
|
460 <xml name="citations"> |
|
5b557716b4b3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9
iuc
parents:
4
diff
changeset
|
461 <citations> |
|
5b557716b4b3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9
iuc
parents:
4
diff
changeset
|
462 <citation type="doi">10.12688/f1000research.16450.1</citation> |
|
5b557716b4b3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9
iuc
parents:
4
diff
changeset
|
463 <yield /> |
|
5b557716b4b3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9
iuc
parents:
4
diff
changeset
|
464 </citations> |
|
5b557716b4b3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9
iuc
parents:
4
diff
changeset
|
465 </xml> |
|
5b557716b4b3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 43d0f694b024cf9b1f0e26d803d3f19f38c95ee9
iuc
parents:
4
diff
changeset
|
466 |
|
0
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
467 |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
468 </macros> |
|
81ad914a0b08
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff
changeset
|
469 |