view test-data/QC_matrix.tsv @ 0:b694fab47ac7 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
author iuc
date Mon, 15 Dec 2025 14:04:25 +0000
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Sample	Total_reads	Mapped_reads	Mapping_pct	Median_depth	Coverage_gte_10x_pct	GC_pct	Kraken_top1_pct	Kraken_unclassified_pct	Contam_pct	QC_status	Total_reads_pass	Coverage_gte_10x_pct_pass	Contam_pct_pass	MTB_reads	Unclassified_reads
ERR2510682	2243645.0	2147374.0	95.71	35	96.56	63.95	89.74	3.35	10.26	Fail	True	True	False	2013353.67	75058.8
ERR4797736	2930841.0	2917004.0	99.53	91	97.28	65.98	96.48	0.51	3.52	Pass	True	True	True	2827782.52	15081.95
ERR4810698	10001091.0	9936216.0	99.35	344	98.82	66.07	98.49	0.29	1.51	Pass	True	True	True	9850413.37	29200.36
ERR4812967	3172047.0	3142927.0	99.08	106	98.54	65.01	98.39	0.34	1.61	Pass	True	True	True	3121015.07	10924.71
ERR4829557	3043795.0	3004399.0	98.71	101	97.21	65.46	97.6	0.73	2.4	Pass	True	True	True	2970882.6	22299.31
ERR4831263	4383612.0	4331884.0	98.82	147	98.4	64.93	98.54	0.33	1.46	Pass	True	True	True	4319583.07	14558.43
ERR4831716	3010970.0	2724126.0	90.47	41	96.99	63.61	84.97	4.71	15.03	Fail	True	True	False	2558310.92	141700.63
ERR8665675	1612980.0	1601774.0	99.31	34	98.06	64.5	97.38	0.47	2.62	Pass	True	True	True	1570695.09	7601.19
ERR8665676	1586447.0	1575329.0	99.3	34	98.01	64.5	97.36	0.48	2.64	Pass	True	True	True	1544565.97	7564.2
ERR8665915	4656415.0	4634080.0	99.52	145	99.09	65.08	98.08	0.28	1.92	Pass	True	True	True	4567086.51	13184.55