Mercurial > repos > iuc > qualifilter

comparison test-data/QC_matrix.tsv @ 0:b694fab47ac7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
author iuc
date Mon, 15 Dec 2025 14:04:25 +0000
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-1:000000000000 0:b694fab47ac7
1 Sample Total_reads Mapped_reads Mapping_pct Median_depth Coverage_gte_10x_pct GC_pct Kraken_top1_pct Kraken_unclassified_pct Contam_pct QC_status Total_reads_pass Coverage_gte_10x_pct_pass Contam_pct_pass MTB_reads Unclassified_reads
2 ERR2510682 2243645.0 2147374.0 95.71 35 96.56 63.95 89.74 3.35 10.26 Fail True True False 2013353.67 75058.8
3 ERR4797736 2930841.0 2917004.0 99.53 91 97.28 65.98 96.48 0.51 3.52 Pass True True True 2827782.52 15081.95
4 ERR4810698 10001091.0 9936216.0 99.35 344 98.82 66.07 98.49 0.29 1.51 Pass True True True 9850413.37 29200.36
5 ERR4812967 3172047.0 3142927.0 99.08 106 98.54 65.01 98.39 0.34 1.61 Pass True True True 3121015.07 10924.71
6 ERR4829557 3043795.0 3004399.0 98.71 101 97.21 65.46 97.6 0.73 2.4 Pass True True True 2970882.6 22299.31
7 ERR4831263 4383612.0 4331884.0 98.82 147 98.4 64.93 98.54 0.33 1.46 Pass True True True 4319583.07 14558.43
8 ERR4831716 3010970.0 2724126.0 90.47 41 96.99 63.61 84.97 4.71 15.03 Fail True True False 2558310.92 141700.63
9 ERR8665675 1612980.0 1601774.0 99.31 34 98.06 64.5 97.38 0.47 2.62 Pass True True True 1570695.09 7601.19
10 ERR8665676 1586447.0 1575329.0 99.3 34 98.01 64.5 97.36 0.48 2.64 Pass True True True 1544565.97 7564.2
11 ERR8665915 4656415.0 4634080.0 99.52 145 99.09 65.08 98.08 0.28 1.92 Pass True True True 4567086.51 13184.55