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diff test-data/qc_matrix.tabular @ 0:b694fab47ac7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
author iuc
date Mon, 15 Dec 2025 14:04:25 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/qc_matrix.tabular	Mon Dec 15 14:04:25 2025 +0000
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+Sample	qualimap_bamqc-avg_gc	qualimap_bamqc-1_x_pc	qualimap_bamqc-5_x_pc	qualimap_bamqc-10_x_pc	qualimap_bamqc-30_x_pc	qualimap_bamqc-50_x_pc	qualimap_bamqc-median_coverage	qualimap_bamqc-mean_coverage	qualimap_bamqc-general_error_rate	qualimap_bamqc-percentage_aligned	qualimap_bamqc-mapped_reads	qualimap_bamqc-mapped_paired_reads	qualimap_bamqc-total_reads	qualimap_bamqc-ns	qualimap_bamqc-duplication_rate	kraken-pct_top_one	kraken-pct_top_n	kraken-pct_unclassified	fastp-pct_duplication	fastp-after_filtering_q30_rate	fastp-after_filtering_q30_bases	fastp-filtering_result_passed_filter_reads	fastp-after_filtering_gc_content	fastp-pct_surviving	fastp-pct_adapter
+ERR2510682	63.94676508255957	99.076737967672	98.4598094267479	96.56377875078317	62.54595909085551	23.169116760345386	35	39.3881	0.25	95.7091696770211	2.147374	2.147194	2.243645	1119	54.48	89.73583930285798	90.33837973561776	3.3453954656229232	2.28059	83.647	186.831594	2.7081999999999997	63.607499999999995	78.28013779524146	7.83090426537435
+ERR4797736	65.98117378087333	97.57900430054684	97.34473194346091	97.28146593972343	96.8967923161387	96.15471450734121	91	89.2787	0.2	99.52788295236759	2.917004	2.916858	2.930841	3124	56.7	96.4836551921708	96.55145884180858	0.514594673035039	3.14759	94.84270000000001	410.387866	3.1974679999999998	65.5292	98.89263878819969	36.10825195034628
+ERR4810698	66.06827162614897	99.10307802368882	98.89272026135139	98.81755362989547	98.62616886832058	98.48000649207577	344	337.5519	0.22999999999999998	99.3513207709039	9.936216	9.935599999999999	10.001090999999999	16602	72.63	98.49338811178657	98.57286100054672	0.2919717772039071	5.84335	92.707	1540.550198	11.088058	65.6448	98.32734427639062	0.3442680548296227
+ERR4812967	65.0135561568253	99.0756499102806	98.80631037018432	98.53640413353003	97.53446195108639	96.27263272713425	106	106.434	0.19	99.08198081554276	3.142927	3.142156	3.172047	1551	41.67	98.3911987578464	98.46440088649423	0.34440566400806866	9.78699	94.0182	529.581781	3.7676499999999997	64.569	99.40619858391054	5.927513273859968
+ERR4829557	65.45924101535405	98.07271034189483	97.66403145211233	97.20967681975331	95.42319992238524	92.96559562528391	101	96.3718	0.22999999999999998	98.70569470020156	3.004399	3.0040299999999998	3.043795	3204	47.1	97.60455607440466	97.72487319640423	0.732615476261983	2.36709	92.5543	423.810995	3.2297979999999997	65.0168	97.3195964509572	0.47186383805488447
+ERR4831263	64.93489615021015	98.80363556243047	98.6006448553473	98.3959767264524	97.5493774044935	96.4940977420089	147	144.7993	0.48	98.81996855561121	4.331884	4.33096	4.383611999999999	963	51.41	98.53935680275767	98.69062775732024	0.3321104526515484	1.1507	86.8973	598.72349	4.667122	64.5177	94.7702870528531	0.30434538937447153
+ERR4831716	63.607144753187995	99.31613326164243	98.26933137966584	96.99410544908208	74.73623675403465	31.720885170956485	41	42.373	0.7799999999999999	90.47336904718412	2.724126	2.7060679999999997	3.01097	154	90.42	84.96633720504228	87.99613075239598	4.706145639797586	8.30781	81.05059999999999	211.60257299999998	3.521098	62.4888	93.46957584947172	3.1281838100653396
+ERR8665675	64.49681937041134	99.10230731636992	98.73660669354773	98.05935897098786	66.35159849231515	13.931033482246077	34	35.867	0.32	99.30526106957309	1.601774	1.601478	1.6129799999999999	1019	32.45	97.37846008433556	97.44301503277686	0.47125112362150823	0.330143	98.3073	159.513983	1.642012	64.0095	96.83787146960127	8.996656110118364
+ERR8665676	64.49749411885034	99.11389059401587	98.72520475880034	98.01429526069401	64.5736447111797	12.862017095195048	34	35.2675	0.32	99.29918869019892	1.575329	1.575054	1.586447	958	32.23	97.36007349499923	97.43262752050951	0.47680128368623975	0.33205399999999996	98.3579	156.973151	1.615348	64.0119	96.8550185873606	9.043050725506657
+ERR8665915	65.07899991839966	99.3171759833092	99.23715842931662	99.09215211405018	98.38822431753867	97.5766695107278	145	146.6877	0.31	99.52033914502896	4.63408	4.633552	4.656415	5053	54.69	98.08160380037087	98.11179842055897	0.28314799475999974	3.2687099999999996	92.937	662.816731	5.10687	64.65950000000001	99.487917374808	22.862192382230347