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annotate test-data/qc_matrix.tabular @ 0:b694fab47ac7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
author iuc
date Mon, 15 Dec 2025 14:04:25 +0000
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b694fab47ac7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
iuc
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diff changeset
1 Sample qualimap_bamqc-avg_gc qualimap_bamqc-1_x_pc qualimap_bamqc-5_x_pc qualimap_bamqc-10_x_pc qualimap_bamqc-30_x_pc qualimap_bamqc-50_x_pc qualimap_bamqc-median_coverage qualimap_bamqc-mean_coverage qualimap_bamqc-general_error_rate qualimap_bamqc-percentage_aligned qualimap_bamqc-mapped_reads qualimap_bamqc-mapped_paired_reads qualimap_bamqc-total_reads qualimap_bamqc-ns qualimap_bamqc-duplication_rate kraken-pct_top_one kraken-pct_top_n kraken-pct_unclassified fastp-pct_duplication fastp-after_filtering_q30_rate fastp-after_filtering_q30_bases fastp-filtering_result_passed_filter_reads fastp-after_filtering_gc_content fastp-pct_surviving fastp-pct_adapter
b694fab47ac7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
iuc
parents:
diff changeset
2 ERR2510682 63.94676508255957 99.076737967672 98.4598094267479 96.56377875078317 62.54595909085551 23.169116760345386 35 39.3881 0.25 95.7091696770211 2.147374 2.147194 2.243645 1119 54.48 89.73583930285798 90.33837973561776 3.3453954656229232 2.28059 83.647 186.831594 2.7081999999999997 63.607499999999995 78.28013779524146 7.83090426537435
b694fab47ac7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
iuc
parents:
diff changeset
3 ERR4797736 65.98117378087333 97.57900430054684 97.34473194346091 97.28146593972343 96.8967923161387 96.15471450734121 91 89.2787 0.2 99.52788295236759 2.917004 2.916858 2.930841 3124 56.7 96.4836551921708 96.55145884180858 0.514594673035039 3.14759 94.84270000000001 410.387866 3.1974679999999998 65.5292 98.89263878819969 36.10825195034628
b694fab47ac7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
iuc
parents:
diff changeset
4 ERR4810698 66.06827162614897 99.10307802368882 98.89272026135139 98.81755362989547 98.62616886832058 98.48000649207577 344 337.5519 0.22999999999999998 99.3513207709039 9.936216 9.935599999999999 10.001090999999999 16602 72.63 98.49338811178657 98.57286100054672 0.2919717772039071 5.84335 92.707 1540.550198 11.088058 65.6448 98.32734427639062 0.3442680548296227
b694fab47ac7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
iuc
parents:
diff changeset
5 ERR4812967 65.0135561568253 99.0756499102806 98.80631037018432 98.53640413353003 97.53446195108639 96.27263272713425 106 106.434 0.19 99.08198081554276 3.142927 3.142156 3.172047 1551 41.67 98.3911987578464 98.46440088649423 0.34440566400806866 9.78699 94.0182 529.581781 3.7676499999999997 64.569 99.40619858391054 5.927513273859968
b694fab47ac7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
iuc
parents:
diff changeset
6 ERR4829557 65.45924101535405 98.07271034189483 97.66403145211233 97.20967681975331 95.42319992238524 92.96559562528391 101 96.3718 0.22999999999999998 98.70569470020156 3.004399 3.0040299999999998 3.043795 3204 47.1 97.60455607440466 97.72487319640423 0.732615476261983 2.36709 92.5543 423.810995 3.2297979999999997 65.0168 97.3195964509572 0.47186383805488447
b694fab47ac7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
iuc
parents:
diff changeset
7 ERR4831263 64.93489615021015 98.80363556243047 98.6006448553473 98.3959767264524 97.5493774044935 96.4940977420089 147 144.7993 0.48 98.81996855561121 4.331884 4.33096 4.383611999999999 963 51.41 98.53935680275767 98.69062775732024 0.3321104526515484 1.1507 86.8973 598.72349 4.667122 64.5177 94.7702870528531 0.30434538937447153
b694fab47ac7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
iuc
parents:
diff changeset
8 ERR4831716 63.607144753187995 99.31613326164243 98.26933137966584 96.99410544908208 74.73623675403465 31.720885170956485 41 42.373 0.7799999999999999 90.47336904718412 2.724126 2.7060679999999997 3.01097 154 90.42 84.96633720504228 87.99613075239598 4.706145639797586 8.30781 81.05059999999999 211.60257299999998 3.521098 62.4888 93.46957584947172 3.1281838100653396
b694fab47ac7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
iuc
parents:
diff changeset
9 ERR8665675 64.49681937041134 99.10230731636992 98.73660669354773 98.05935897098786 66.35159849231515 13.931033482246077 34 35.867 0.32 99.30526106957309 1.601774 1.601478 1.6129799999999999 1019 32.45 97.37846008433556 97.44301503277686 0.47125112362150823 0.330143 98.3073 159.513983 1.642012 64.0095 96.83787146960127 8.996656110118364
b694fab47ac7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
iuc
parents:
diff changeset
10 ERR8665676 64.49749411885034 99.11389059401587 98.72520475880034 98.01429526069401 64.5736447111797 12.862017095195048 34 35.2675 0.32 99.29918869019892 1.575329 1.575054 1.586447 958 32.23 97.36007349499923 97.43262752050951 0.47680128368623975 0.33205399999999996 98.3579 156.973151 1.615348 64.0119 96.8550185873606 9.043050725506657
b694fab47ac7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/qualifilter commit c1d08b00ccb4837dd592970d2000f5fffe695e9f
iuc
parents:
diff changeset
11 ERR8665915 65.07899991839966 99.3171759833092 99.23715842931662 99.09215211405018 98.38822431753867 97.5766695107278 145 146.6877 0.31 99.52033914502896 4.63408 4.633552 4.656415 5053 54.69 98.08160380037087 98.11179842055897 0.28314799475999974 3.2687099999999996 92.937 662.816731 5.10687 64.65950000000001 99.487917374808 22.862192382230347