Mercurial > repos > iuc > poretools_yield_plot

annotate macros.xml @ 2:d4bbe0275728 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
author iuc
date Wed, 01 Sep 2021 08:02:33 +0000
parents b17593289ad0
children 2dc2270d105b
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a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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1 <?xml version="1.0"?>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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2 <macros>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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3 <xml name="requirements">
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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4 <requirements>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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5 <requirement type="package" version="@VERSION@">poretools</requirement>
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6 <yield />
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7 </requirements>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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8 </xml>
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d4bbe0275728 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
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9 <xml name="bio_tools">
d4bbe0275728 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
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10 <xrefs>
d4bbe0275728 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
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11 <xref type="bio.tools">obitools</xref>
d4bbe0275728 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
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12 </xrefs>
d4bbe0275728 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
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13 </xml>
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a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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14 <token name="@VERSION@">0.6.1a1</token>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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15 <xml name="citations">
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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16 <citations>
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17 <citation type="doi">10.1093/bioinformatics/btu555</citation>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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18 </citations>
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19 </xml>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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20 <xml name="plot_options">
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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21 <param name="extension" type="select" label="File format for histogram">
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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22 <option value="png">PNG</option>
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23 <option value="pdf">PDF</option>
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24 <option value="svg">SVG</option>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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25 <yield />
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26 </param>
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27 <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" />
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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28 </xml>
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29 <xml name="image_output">
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30 <data name="output" format="png">
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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31 <change_format>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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32 <when input="extension" value="pdf" format="pdf" />
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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33 <when input="extension" value="svg" format="svg" />
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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34 <yield />
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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35 </change_format>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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36 </data>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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37 </xml>
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38 <xml name="stat_options">
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39 <param name="type" argument="--type" type="select" label="Filter by type of read">
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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40 <option value="all" selected="true">All</option>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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41 <option value="fwd">Forward reads</option>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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42 <option value="rev">Reverse reads</option>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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43 <option value="fwd,rev">Forward and reverse</option>
a8c8a7354ab7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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44 <option value="2D">2D</option>
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45 <option value="best">Best</option>
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46 </param>
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47 </xml>
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48 <xml name="test_input">
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49 <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" />
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50 </xml>
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51 <xml name="length_options">
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52 <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" />
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53 <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" />
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54 </xml>
1
b17593289ad0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"
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55 <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND="agg" &&]]></token>
b17593289ad0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"
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56 <token name="@profile@">18.09</token>
0
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57 </macros>