Mercurial > repos > iuc > poretools_times

comparison poretools_times.xml @ 3:06c449875523 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
author iuc
date Fri, 27 Sep 2024 07:42:24 +0000
parents a12cb383ec4c
children
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2:a12cb383ec4c 3:06c449875523
1 <?xml version="1.0"?> 1 <tool id="poretools_times" name="Extract time" version="@VERSION@.0" profile="@PROFILE@">
2 <tool id="poretools_times" name="Extract time" version="@VERSION@.0">
3 <description>and channel information from a set of FAST5 files</description> 2 <description>and channel information from a set of FAST5 files</description>
4 <expand macro="bio_tools"/>
5 <macros> 3 <macros>
6 <import>macros.xml</import> 4 <import>macros.xml</import>
7 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
8 <expand macro="requirements" /> 7 <expand macro="requirements" />
9 <command detect_errors="aggressive"> 8 <command detect_errors="aggressive">
10 <![CDATA[ 9 <![CDATA[
11 poretools times --utc '$input' > '$output' 10 poretools times --utc '$input' > '$output'
12 ]]> 11 ]]>
18 <data name="output" format="tabular" /> 17 <data name="output" format="tabular" />
19 </outputs> 18 </outputs>
20 <tests> 19 <tests>
21 <test> 20 <test>
22 <expand macro="test_input" /> 21 <expand macro="test_input" />
23 <param name="types" value="fwd" />
24 <param name="detailed" value="true" />
25 <output name="output" file="poretools-times-out1.tabular" ftype="tabular" /> 22 <output name="output" file="poretools-times-out1.tabular" ftype="tabular" />
26 </test>
27 <test>
28 <expand macro="test_input" />
29 <param name="types" value="rev" />
30 <param name="detailed" value="false" />
31 <output name="output" file="poretools-times-out2.tabular" ftype="tabular" />
32 </test>
33 <test>
34 <expand macro="test_input" />
35 <param name="types" value="2D" />
36 <param name="detailed" value="true" />
37 <output name="output" file="poretools-times-out3.tabular" ftype="tabular" />
38 </test>
39 <test>
40 <expand macro="test_input" />
41 <param name="types" value="best" />
42 <param name="detailed" value="false" />
43 <output name="output" file="poretools-times-out4.tabular" ftype="tabular" />
44 </test>
45 <test>
46 <expand macro="test_input" />
47 <param name="types" value="all" />
48 <param name="detailed" value="true" />
49 <output name="output" file="poretools-times-out5.tabular" ftype="tabular" />
50 </test> 23 </test>
51 </tests> 24 </tests>
52 <help> 25 <help>
53 Collect read size statistics from a set of FAST5 files. 26 Collect read size statistics from a set of FAST5 files.
54 </help> 27 </help>