Mercurial > repos > iuc > poretools_times

annotate poretools_times.xml @ 3:06c449875523 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
author iuc
date Fri, 27 Sep 2024 07:42:24 +0000
parents a12cb383ec4c
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06c449875523 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
iuc
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1 <tool id="poretools_times" name="Extract time" version="@VERSION@.0" profile="@PROFILE@">
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2 <description>and channel information from a set of FAST5 files</description>
d7d62b9c5608 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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3 <macros>
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4 <import>macros.xml</import>
d7d62b9c5608 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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5 </macros>
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06c449875523 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
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6 <expand macro="bio_tools"/>
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d7d62b9c5608 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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7 <expand macro="requirements" />
d7d62b9c5608 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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8 <command detect_errors="aggressive">
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9 <![CDATA[
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10 poretools times --utc '$input' > '$output'
d7d62b9c5608 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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11 ]]>
d7d62b9c5608 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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12 </command>
d7d62b9c5608 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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13 <inputs>
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14 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
d7d62b9c5608 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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15 </inputs>
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16 <outputs>
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17 <data name="output" format="tabular" />
d7d62b9c5608 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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18 </outputs>
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19 <tests>
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20 <test>
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21 <expand macro="test_input" />
d7d62b9c5608 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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22 <output name="output" file="poretools-times-out1.tabular" ftype="tabular" />
d7d62b9c5608 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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23 </test>
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24 </tests>
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25 <help>
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26 Collect read size statistics from a set of FAST5 files.
d7d62b9c5608 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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27 </help>
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28 <expand macro="citations" />
d7d62b9c5608 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
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29 </tool>