Mercurial > repos > iuc > plink

diff plink.xml @ 2:be07debd512a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit 3ba5c41a39870355d1ba5dfc10a49e84d6135981"
author iuc
date Wed, 23 Sep 2020 19:08:30 +0000
parents e05e48ef0a9d
children d6442267be14
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line diff
--- a/plink.xml	Wed Sep 23 08:04:32 2020 +0000
+++ b/plink.xml	Wed Sep 23 19:08:30 2020 +0000
@@ -389,7 +389,7 @@
                     <option value='vcf'>VCF input file</option>
                 </param>
                 <when value='bfile'>
-                    <param format='binary' name='bed' type='data' label='plink bed file'/>
+                    <param format='pbed' name='bed' type='data' label='plink bed file'/>
                     <param format='tabular,tsv' name='bim' type='data' label='plink bim file'/>
                     <param format='txt' name='fam' type='data' label='plink fam file'/>
                 </when>
@@ -960,9 +960,9 @@
     <outputs>
         <!--Main-->
         <collection name='plink_out' type='list' label='Plink main outputs'>
-            <data name='plink_bed' format='binary' from_work_dir='plink_output/plink_output.bed'/>
+            <data name='plink_bed' format='pbed' from_work_dir='plink_output/plink_output.bed'/>
             <data name='plink_bim' format='tabular' from_work_dir='plink_output/plink_output.bim'/>
-            <data name='plink_fam' format='tabular' from_work_dir='plink_output/plink_output.fam'/>
+            <data name='plink_fam' format='txt' from_work_dir='plink_output/plink_output.fam'/>
             <data name='plink_log' format='txt' from_work_dir='plink_output/plink_output.log'/>
         </collection>