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comparison plink.xml @ 2:be07debd512a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit 3ba5c41a39870355d1ba5dfc10a49e84d6135981"
author iuc
date Wed, 23 Sep 2020 19:08:30 +0000
parents e05e48ef0a9d
children d6442267be14
comparison
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1:e05e48ef0a9d 2:be07debd512a
387 <param name='filetype' type='select' label='Main input data type'> 387 <param name='filetype' type='select' label='Main input data type'>
388 <option value='bfile'>plink file</option> 388 <option value='bfile'>plink file</option>
389 <option value='vcf'>VCF input file</option> 389 <option value='vcf'>VCF input file</option>
390 </param> 390 </param>
391 <when value='bfile'> 391 <when value='bfile'>
392 <param format='binary' name='bed' type='data' label='plink bed file'/> 392 <param format='pbed' name='bed' type='data' label='plink bed file'/>
393 <param format='tabular,tsv' name='bim' type='data' label='plink bim file'/> 393 <param format='tabular,tsv' name='bim' type='data' label='plink bim file'/>
394 <param format='txt' name='fam' type='data' label='plink fam file'/> 394 <param format='txt' name='fam' type='data' label='plink fam file'/>
395 </when> 395 </when>
396 <when value='vcf'> 396 <when value='vcf'>
397 <param name='input' format='vcf,bcf' type='data' label='VCF/BCF Input file'/> 397 <param name='input' format='vcf,bcf' type='data' label='VCF/BCF Input file'/>
958 </conditional> 958 </conditional>
959 </inputs> 959 </inputs>
960 <outputs> 960 <outputs>
961 <!--Main--> 961 <!--Main-->
962 <collection name='plink_out' type='list' label='Plink main outputs'> 962 <collection name='plink_out' type='list' label='Plink main outputs'>
963 <data name='plink_bed' format='binary' from_work_dir='plink_output/plink_output.bed'/> 963 <data name='plink_bed' format='pbed' from_work_dir='plink_output/plink_output.bed'/>
964 <data name='plink_bim' format='tabular' from_work_dir='plink_output/plink_output.bim'/> 964 <data name='plink_bim' format='tabular' from_work_dir='plink_output/plink_output.bim'/>
965 <data name='plink_fam' format='tabular' from_work_dir='plink_output/plink_output.fam'/> 965 <data name='plink_fam' format='txt' from_work_dir='plink_output/plink_output.fam'/>
966 <data name='plink_log' format='txt' from_work_dir='plink_output/plink_output.log'/> 966 <data name='plink_log' format='txt' from_work_dir='plink_output/plink_output.log'/>
967 </collection> 967 </collection>
968 968
969 <!--Data Manage--> 969 <!--Data Manage-->
970 <data name='plink_ped' format='txt' from_work_dir='plink_output/plink_output.ped' label='${tool.name}: Recode ped'> 970 <data name='plink_ped' format='txt' from_work_dir='plink_output/plink_output.ped' label='${tool.name}: Recode ped'>