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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
author iuc
date Tue, 10 Feb 2026 17:52:55 +0000
parents f52df366f012
children
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{'plasmidfinder': {'results': {'Gram Positive': {'Inc18': 'No hit found',
                                                 'Rep3': {'contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302:308..1252:rep11a_1_repA(pB82)_AB178871:99.894180': {'HSP_length': 945,
                                                                                                                                                                                                                                        'accession': 'AB178871',
                                                                                                                                                                                                                                        'contig_name': 'contig00003 '
                                                                                                                                                                                                                                                       'len=3227 '
                                                                                                                                                                                                                                                       'cov=2.2 '
                                                                                                                                                                                                                                                       'corr=0 '
                                                                                                                                                                                                                                                       'origname=NODE_3_length_3227_cov_2.232903_pilon '
                                                                                                                                                                                                                                                       'sw=shovill-spades/1.1.0 '
                                                                                                                                                                                                                                                       'date=20220302',
                                                                                                                                                                                                                                        'coverage': 100.0,
                                                                                                                                                                                                                                        'hit_id': 'contig00003 '
                                                                                                                                                                                                                                                  'len=3227 '
                                                                                                                                                                                                                                                  'cov=2.2 '
                                                                                                                                                                                                                                                  'corr=0 '
                                                                                                                                                                                                                                                  'origname=NODE_3_length_3227_cov_2.232903_pilon '
                                                                                                                                                                                                                                                  'sw=shovill-spades/1.1.0 '
                                                                                                                                                                                                                                                  'date=20220302:308..1252:rep11a_1_repA(pB82)_AB178871:99.894180',
                                                                                                                                                                                                                                        'identity': 99.89,
                                                                                                                                                                                                                                        'note': 'repA(pB82)',
                                                                                                                                                                                                                                        'plasmid': 'rep11a',
                                                                                                                                                                                                                                        'position_in_ref': '1..945',
                                                                                                                                                                                                                                        'positions_in_contig': '308..1252',
                                                                                                                                                                                                                                        'template_length': 945}},
                                                 'Rep_trans': {'contig00008 len=2292 cov=2.6 corr=0 origname=NODE_11_length_2292_cov_2.631409_pilon sw=shovill-spades/1.1.0 date=20220302:1703..2104:rep14a_2_ORF1(pKQ10)_EFU01917:99.502488': {'HSP_length': 402,
                                                                                                                                                                                                                                                'accession': 'EFU01917',
                                                                                                                                                                                                                                                'contig_name': 'contig00008 '
                                                                                                                                                                                                                                                               'len=2292 '
                                                                                                                                                                                                                                                               'cov=2.6 '
                                                                                                                                                                                                                                                               'corr=0 '
                                                                                                                                                                                                                                                               'origname=NODE_11_length_2292_cov_2.631409_pilon '
                                                                                                                                                                                                                                                               'sw=shovill-spades/1.1.0 '
                                                                                                                                                                                                                                                               'date=20220302',
                                                                                                                                                                                                                                                'coverage': 100.0,
                                                                                                                                                                                                                                                'hit_id': 'contig00008 '
                                                                                                                                                                                                                                                          'len=2292 '
                                                                                                                                                                                                                                                          'cov=2.6 '
                                                                                                                                                                                                                                                          'corr=0 '
                                                                                                                                                                                                                                                          'origname=NODE_11_length_2292_cov_2.631409_pilon '
                                                                                                                                                                                                                                                          'sw=shovill-spades/1.1.0 '
                                                                                                                                                                                                                                                          'date=20220302:1703..2104:rep14a_2_ORF1(pKQ10)_EFU01917:99.502488',
                                                                                                                                                                                                                                                'identity': 99.5,
                                                                                                                                                                                                                                                'note': 'ORF1(pKQ10)',
                                                                                                                                                                                                                                                'plasmid': 'rep14a',
                                                                                                                                                                                                                                                'position_in_ref': '1..402',
                                                                                                                                                                                                                                                'positions_in_contig': '1703..2104',
                                                                                                                                                                                                                                                'template_length': 402}}}},
                   'run_info': {'date': '10.02.2026', 'time': '15:20:29'},
                   'user_input': {'file_format': 'fasta',
                                  'filename(s)': ['/tmp/tmp1yi7ks0w/files/1/b/7/dataset_1b7d7582-03af-4303-8f60-ef2c3c433521.dat'],
                                  'method': 'blast'}}}