Mercurial > repos > iuc > plasmidfinder

comparison test-data/test_1/logfile_test1.log @ 4:65b333eed5c2 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/plasmidfinder commit 232de7b04558cf28e2caffb8a5e0520b7dd1b645
author iuc
date Tue, 10 Feb 2026 17:52:55 +0000
parents f52df366f012
children
comparison
equal deleted inserted replaced
3:e9813d6ac5ab 4:65b333eed5c2
1 Found: rep2_2_repR(pEF1)_DQ198088
2 Saving: contig00014 len=836 cov=2.5 corr=0 origname=NODE_172_length_836_cov_2.489422_pilon sw=shovill-spades/1.1.0 date=20220302:2..836:rep2_2_repR(pEF1)_DQ198088:55.890228
3 Found: rep11a_1_repA(pB82)_AB178871
4 Saving: contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302:308..1252:rep11a_1_repA(pB82)_AB178871:99.894180
5 Found: rep14a_2_ORF1(pKQ10)_EFU01917
6 Saving: contig00008 len=2292 cov=2.6 corr=0 origname=NODE_11_length_2292_cov_2.631409_pilon sw=shovill-spades/1.1.0 date=20220302:1703..2104:rep14a_2_ORF1(pKQ10)_EFU01917:99.502488
7 {'plasmidfinder': {'results': {'Gram Positive': {'Inc18': 'No hit found', 1 {'plasmidfinder': {'results': {'Gram Positive': {'Inc18': 'No hit found',
8 'Rep3': {'contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302:308..1252:rep11a_1_repA(pB82)_AB178871:99.894180': {'HSP_length': 945, 2 'Rep3': {'contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302:308..1252:rep11a_1_repA(pB82)_AB178871:99.894180': {'HSP_length': 945,
9 'accession': 'AB178871', 3 'accession': 'AB178871',
10 'contig_name': 'contig00003 ' 4 'contig_name': 'contig00003 '
11 'len=3227 ' 5 'len=3227 '
49 'note': 'ORF1(pKQ10)', 43 'note': 'ORF1(pKQ10)',
50 'plasmid': 'rep14a', 44 'plasmid': 'rep14a',
51 'position_in_ref': '1..402', 45 'position_in_ref': '1..402',
52 'positions_in_contig': '1703..2104', 46 'positions_in_contig': '1703..2104',
53 'template_length': 402}}}}, 47 'template_length': 402}}}},
54 'run_info': {'date': '09.09.2022', 'time': '08:52:55'}, 48 'run_info': {'date': '10.02.2026', 'time': '15:20:29'},
55 'user_input': {'file_format': 'fasta', 49 'user_input': {'file_format': 'fasta',
56 'filename(s)': ['/tmp/tmpj3aqa6lu/files/9/6/4/dataset_9649367d-27ab-42b3-8f51-56f81f942d9c.dat'], 50 'filename(s)': ['/tmp/tmp1yi7ks0w/files/1/b/7/dataset_1b7d7582-03af-4303-8f60-ef2c3c433521.dat'],
57 'method': 'blast'}}} 51 'method': 'blast'}}}