Mercurial > repos > iuc > pilon
changeset 2:abf13e474393 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pilon commit e01d50f8aa0f9a06dcf162ff6ac7d447c69a2324
| author | iuc |
|---|---|
| date | Sat, 13 Aug 2016 04:46:06 -0400 |
| parents | cd5f453e7364 |
| children | 78d5c62d0f4a |
| files | all_fasta.loc.sample tool_data_table_conf.xml.sample |
| diffstat | 2 files changed, 8 insertions(+), 18 deletions(-) [+] |
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--- a/all_fasta.loc.sample Sat Aug 13 04:40:03 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,18 +0,0 @@ -#This file lists the locations and dbkeys of all the fasta files -#under the "genome" directory (a directory that contains a directory -#for each build). The script extract_fasta.py will generate the file -#all_fasta.loc. This file has the format (white space characters are -#TAB characters): -# -#<unique_build_id> <dbkey> <display_name> <file_path> -# -#So, all_fasta.loc could look something like this: -# -#apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa -#hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa -#hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa -# -#Your all_fasta.loc file should contain an entry for each individual -#fasta file. So there will be multiple fasta files for each build, -#such as with hg19 above. -#
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Sat Aug 13 04:46:06 2016 -0400 @@ -0,0 +1,8 @@ +<tables> + <!-- Locations of all fasta files under genome directory --> + <table name="all_fasta" comment_char="#"> + <columns>value, dbkey, name, path</columns> + <file path="tool-data/all_fasta.loc" /> + </table> +</tables> +