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changeset 7:3d3196c5ffc0 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/pbmm2 commit c8e260e6e3ecb424888a53d22602c351e775d7a2
author iuc
date Mon, 09 Feb 2026 21:08:41 +0000
parents 1f9d3681e434
children
files macros.xml pbmm2.xml
diffstat 2 files changed, 14 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Mon Feb 02 09:07:07 2026 +0000
+++ b/macros.xml	Mon Feb 09 21:08:41 2026 +0000
@@ -1,7 +1,7 @@
 <macros>
     <token name="@TOOL_VERSION@">26.1.0</token>
-    <token name="@VERSION_SUFFIX@">0</token>
-    <token name="@PROFILE@">20.09</token>
+    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@PROFILE@">24.2</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">pbmm2</requirement>
--- a/pbmm2.xml	Mon Feb 02 09:07:07 2026 +0000
+++ b/pbmm2.xml	Mon Feb 09 21:08:41 2026 +0000
@@ -71,8 +71,10 @@
     <tests>
         <!-- test1: basic test -->
         <test expect_num_outputs="1">
-            <param name="reference_source_selector" value="history" />
-            <param name="ref_file" ftype="fasta" value="bnd-ref.fasta"/>
+            <conditional name="reference_source">
+                <param name="reference_source_selector" value="history" />
+                <param name="ref_file" ftype="fasta" value="bnd-ref.fasta"/>
+            </conditional>
             <param name="reads" value="bnd.bam"/>
             <output name="bam">
                 <assert_contents>
@@ -82,8 +84,10 @@
         </test>
         <!-- test2: map some reads for use with pbgcpp -->
         <test expect_num_outputs="1">
-            <param name="reference_source_selector" value="history" />
-            <param name="ref_file" ftype="fasta" value="All4mer.V2.01_Insert.fa"/>
+            <conditional name="reference_source">
+                <param name="reference_source_selector" value="history" />
+                <param name="ref_file" ftype="fasta" value="All4mer.V2.01_Insert.fa"/>
+            </conditional>
             <param name="reads" value="out.aligned_subreads.bam"/>
             <param name="preset" value="SUBREAD"/>
             <output name="bam">
@@ -94,8 +98,10 @@
         </test>
         <!-- test3: cached genome -->
         <test>
-            <param name="reference_source_selector" value="cached" />
-            <param name="ref_file" value="bnd-ref"/>
+            <conditional name="reference_source">
+                <param name="reference_source_selector" value="cached" />
+                <param name="ref_file" value="bnd-ref"/>
+            </conditional>
             <param name="reads" value="bnd.bam"/>
             <output name="bam">
                 <assert_contents>