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comparison panta.xml @ 3:1de68b7a1e3f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/panta commit 6adea21f21f7445e92568579096b7c7ea4781e50
author iuc
date Wed, 22 Oct 2025 15:47:16 +0000
parents 137d00a9a598
children
comparison
equal deleted inserted replaced
2:137d00a9a598 3:1de68b7a1e3f
125 <data format="fasta" name="representative" label="${tool.name} on ${on_string} : Representative FASTA" from_work_dir="out/representative.fasta"/> 125 <data format="fasta" name="representative" label="${tool.name} on ${on_string} : Representative FASTA" from_work_dir="out/representative.fasta"/>
126 <data format="json" name="samples" label="${tool.name} on ${on_string} : Samples" from_work_dir="out/samples.json"/> 126 <data format="json" name="samples" label="${tool.name} on ${on_string} : Samples" from_work_dir="out/samples.json"/>
127 <data format="txt" name="summary_statistics" label="${tool.name} on ${on_string} : Summary Statistics" from_work_dir="out/summary_statistics.txt"/> 127 <data format="txt" name="summary_statistics" label="${tool.name} on ${on_string} : Summary Statistics" from_work_dir="out/summary_statistics.txt"/>
128 128
129 <!--Alignment outputs --> 129 <!--Alignment outputs -->
130 <data format="txt" name="core_gene_alignment" label="${tool.name} on ${on_string} : Core Gene Alignment" from_work_dir="out/core_gene_alignment.aln.gz"> 130 <data format="fasta" name="core_gene_alignment" label="${tool.name} on ${on_string} : Core Gene Alignment" from_work_dir="out/core_gene_alignment.aln.gz">
131 <filter> ['alignment'] != 'None' </filter> 131 <filter> ['alignment'] != 'None' </filter>
132 </data> 132 </data>
133 <data format="txt" name="pan_genome_reference" label="${tool.name} on ${on_string} : Pan Genome Reference" from_work_dir="out/pan_genome_reference.fna"> 133 <data format="fasta" name="pan_genome_reference" label="${tool.name} on ${on_string} : Pan Genome Reference" from_work_dir="out/pan_genome_reference.fna">
134 <filter> ['alignment'] != 'None' </filter> 134 <filter> ['alignment'] != 'None' </filter>
135 </data> 135 </data>
136 </outputs> 136 </outputs>
137 137
138 <tests> 138 <tests>
398 <assert_contents> 398 <assert_contents>
399 <has_text text="Soft core genes"/> 399 <has_text text="Soft core genes"/>
400 <has_n_lines n="6" delta='3'/> 400 <has_n_lines n="6" delta='3'/>
401 </assert_contents> 401 </assert_contents>
402 </output> 402 </output>
403 <output name="core_gene_alignment" ftype="txt"> 403 <output name="core_gene_alignment" ftype="fasta">
404 <assert_contents> 404 <assert_contents>
405 <has_n_lines n="96130" delta='3'/> 405 <has_n_lines n="96130" delta='3'/>
406 </assert_contents> 406 </assert_contents>
407 </output> 407 </output>
408 <output name="pan_genome_reference" ftype="txt"> 408 <output name="pan_genome_reference" ftype="fasta">
409 <assert_contents> 409 <assert_contents>
410 <has_text text="AAAGGCGTTTGGTATATAACGATGCCAG"/> 410 <has_text text="AAAGGCGTTTGGTATATAACGATGCCAG"/>
411 <has_n_lines n="84292" delta='3'/> 411 <has_n_lines n="84292" delta='3'/>
412 </assert_contents> 412 </assert_contents>
413 </output> 413 </output>