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annotate macros.xml @ 2:885b3664540a draft

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planemo upload for repository https://github.com/open2c/pairtools commit abd18c860877b2100e02019b4b597d6d2569994e
author iuc
date Thu, 18 Sep 2025 05:56:14 +0000
parents 6374475dd766
children 7d0584cf7f1f
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8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
diff changeset
1 <macros>
1
6374475dd766 planemo upload for repository https://github.com/open2c/pairtools commit dcee7286748c82b3f046d9a908bb9ef6365718cf
iuc
parents: 0
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2 <token name="@TOOL_VERSION@">1.1.3</token>
2
885b3664540a planemo upload for repository https://github.com/open2c/pairtools commit abd18c860877b2100e02019b4b597d6d2569994e
iuc
parents: 1
diff changeset
3 <token name="@SUFFIX_VERSION@">5</token>
885b3664540a planemo upload for repository https://github.com/open2c/pairtools commit abd18c860877b2100e02019b4b597d6d2569994e
iuc
parents: 1
diff changeset
4 <token name="@PROFILE_VERSION@">25.0</token>
0
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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5 <xml name="edam_ontology">
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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6 <edam_datas>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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7 <edam_data>topic_1381</edam_data>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
diff changeset
8 </edam_datas>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
diff changeset
9 </xml>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
diff changeset
10 <xml name="requirements">
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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11 <requirements>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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12 <requirement type="package" version="@TOOL_VERSION@">pairtools</requirement>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
diff changeset
13 </requirements>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
diff changeset
14 </xml>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
diff changeset
15 <xml name="creator">
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
diff changeset
16 <creator>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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17 <organization name="IZW" url="https://www.izw-berlin.de/en/home.html"/>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
diff changeset
18 </creator>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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19 </xml>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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20 <xml name="citations">
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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21 <citations>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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22 <citation type="doi">10.1101/2023.02.13.528389</citation>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
diff changeset
23 </citations>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
diff changeset
24 </xml>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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25 <xml name="walks_policy_options">
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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26 <option value="mask">mask - Mask walks (chrom="!", pos=0, strand="-")</option>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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27 <option value="5any">5any - Report the 5'-most alignment on each side</option>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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28 <option value="5unique" selected="true">5unique - Report the 5'-most unique alignment on each side, if present</option>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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29 <option value="3any">3any - Report the 3'-most alignment on each side</option>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
diff changeset
30 <option value="3unique">3unique - Report the 3'-most unique alignment on each side, if present</option>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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31 <option value="all">all - Report all available unique alignments on each side</option>
8ca8c65fc33f planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
iuc
parents:
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32 </xml>
2
885b3664540a planemo upload for repository https://github.com/open2c/pairtools commit abd18c860877b2100e02019b4b597d6d2569994e
iuc
parents: 1
diff changeset
33 </macros>