Mercurial > repos > iuc > package_trinity_2_2_0

annotate tool_dependencies.xml @ 1:e7df326a23e6 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit d73994a18221073f2120deb17e8d2dfa25e6134e
author iuc
date Thu, 10 Nov 2016 12:48:25 -0500
parents 58d411f36881
children
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0
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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diff changeset
1 <?xml version="1.0"?>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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2 <tool_dependency>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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3 <package name="ncurses" version="6.0">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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4 <repository changeset_revision="15e2190c87ca" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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5 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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6 <package name="zlib" version="1.2.8">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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7 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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8 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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9 <package name="lapack" version="3.4.2">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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10 <repository changeset_revision="ad6c1415507a" name="package_lapack_3_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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11 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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12 <package name="bzlib" version="1.0.6">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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13 <repository changeset_revision="29f79feefc77" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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14 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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15 <package name="trinity" version="2.2.0">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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16 <install version="1.0">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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17 <actions>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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18 <action sha256sum="f34603e56ac76a81447dd230b31248d5890ecffee8ef264104d4f1fa7fe46c9e" type="download_by_url">https://github.com/trinityrnaseq/trinityrnaseq/archive/v2.2.0.tar.gz</action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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19 <action type="set_environment_for_install">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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20 <repository changeset_revision="15e2190c87ca" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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21 <package name="ncurses" version="6.0" />
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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22 </repository>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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23 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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24 <package name="zlib" version="1.2.8" />
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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25 </repository>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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26 <repository changeset_revision="ad6c1415507a" name="package_lapack_3_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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27 <package name="lapack" version="3.4.2" />
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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28 </repository>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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29 <repository changeset_revision="29f79feefc77" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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30 <package name="bzlib" version="1.0.6" />
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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31 </repository>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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32 </action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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33
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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34 <action type="setup_r_environment">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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35 <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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36 <package name="R" version="3.2.1" />
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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37 </repository>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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38 <repository changeset_revision="ad6c1415507a" name="package_lapack_3_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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39 <package name="lapack" version="3.4.2" />
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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40 </repository>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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41 <package sha256sum="68782050f5252c4246f1b5b335105eccf4c804d57a0cd41eb63a300f7e0241a0">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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42 https://depot.galaxyproject.org/software/Rcpp/Rcpp_0.12.0_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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43 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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44 <package sha256sum="f30155fdd4745b4c9a548a25a30b6ae5fe3e3f6cf4136ac485a75c90555934a0">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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45 https://depot.galaxyproject.org/software/RcppArmadillo/RcppArmadillo_0.5.500.2.0_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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46 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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47 <package sha256sum="560be08f12ff92bab2aa926dd4dc22f05b6edd9e87afb22e2f52ef7d7d1fd103">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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48 https://depot.galaxyproject.org/software/ape/ape_3.0-11_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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49 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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50 <package sha256sum="f3e9781e84e114b7a88eb099825936cc5ae7276bbba5af94d35adb1b3ea2ccdd">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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51 https://depot.galaxyproject.org/software/RColorBrewer/RColorBrewer_1.1-2_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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52 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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53 <package sha256sum="f31afae9b1998dcf806d9ec82474fac49837082e310a2c6e3ee3cbcb55ff641b">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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54 https://depot.galaxyproject.org/software/plyr/plyr_1.8.3_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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55 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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56 <package sha256sum="3062422c2ca917e52749464d63084a0d3cc061f59083f069280ec26336ce2f55">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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57 https://depot.galaxyproject.org/software/digest/digest_0.6.8_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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58 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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59 <package sha256sum="b08ba8e62e0ce05e7a4c07ba3ffa67719161db62438b04f14343f8928d74304d">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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60 https://depot.galaxyproject.org/software/gtable/gtable_0.1.2_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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61 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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62 <package sha256sum="1cd67b64f287aac9e8fd95dd4a0cab829e0fb7870fd264ede281be0b65ce7ca0">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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63 https://depot.galaxyproject.org/software/stringi/stringi_0.5-5_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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64 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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65 <package sha256sum="05c45943ada9443134caa0ab24db4a962b629f00b755ccf039a2a2a7b2c92ae8">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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66 https://depot.galaxyproject.org/software/magrittr/magrittr_1.5_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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67 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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68 <package sha256sum="f8267db85b83c0fc8904009719c93296934775b0d6890c996ec779ec5336df4a">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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69 https://depot.galaxyproject.org/software/stringr/stringr_1.0.0_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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70 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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71 <package sha256sum="fbd49f75a5b0b7266378515af98db310cf6c772bf6e68bed01f38ee99b408042">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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72 https://depot.galaxyproject.org/software/reshape2/reshape2_1.4.1_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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73 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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74 <package sha256sum="31151eaf36f70bdc1172da5ff5088ee51cc0a3db4ead59c7c38c25316d580dd1">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
diff changeset
75 https://depot.galaxyproject.org/software/dichromat/dichromat_2.0-0_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
diff changeset
76 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
diff changeset
77 <package sha256sum="ba3165c5b906edadcd1c37cad0ef58f780b0af651f3fdeb49fbb2dc825251679">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
diff changeset
78 https://depot.galaxyproject.org/software/colorspace/colorspace_1.2-6_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
diff changeset
79 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
diff changeset
80 <package sha256sum="84e787f58f626c52a1e3fc1201f724835dfa8023358bfed742e7001441f425ae">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
diff changeset
81 https://depot.galaxyproject.org/software/munsell/munsell_0.4.2_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
diff changeset
82 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
diff changeset
83 <package sha256sum="0d8069eb48e91f6f6d6a9148f4e2dc5026cabead15dd15fc343eff9cf33f538f">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
diff changeset
84 https://depot.galaxyproject.org/software/labeling/labeling_0.3_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
diff changeset
85 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
diff changeset
86 <package sha256sum="f4e1b98e3501b3a27b1a86ecc622a4653aff31c9f93248d7b5d428b03ebe6fce">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
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87 https://depot.galaxyproject.org/software/scales/scales_0.3.0_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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88 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
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89 <package sha256sum="d0d941bfbf247879b3510c8ef3e35853b1fbe83ff3ce952e93d3f8244afcbb0e">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
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90 https://depot.galaxyproject.org/software/proto/proto_0.3-10_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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91 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
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92 <package sha256sum="835fe22547222742fa84b8bf77774432abe3dff267932b8b8ed06de554f8e79b">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
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93 https://depot.galaxyproject.org/software/MASS/MASS_7.3-44_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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94 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
diff changeset
95 <package sha256sum="40248e6b31307787e44e45d806e7a33095844a9bbe864cc7583dd311b19c241d">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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96 https://depot.galaxyproject.org/software/ggplot2/ggplot2_1.0.1_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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97 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
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98 <package sha256sum="fbd49f75a5b0b7266378515af98db310cf6c772bf6e68bed01f38ee99b408042">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
parents:
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99 https://depot.galaxyproject.org/software/reshape2/reshape2_1.4.1_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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100 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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101 <package sha256sum="36f8bec5831ceedde3d3ab21d9db87cf1a32133a04f46e1803c833a510b8d17d">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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102 https://depot.galaxyproject.org/software/qvalue/qvalue_2.2.2_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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103 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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104 <package sha256sum="02fb5178555e0288c4ec8f9b564721e31198dbf647aca0d3957c886f4c3b84a4">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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105 https://depot.galaxyproject.org/software/amap/amap_0.8-7_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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106 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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107 <package sha256sum="0f67391d3fd6bc970293b5eb11dcd14f15686b61bce1c6da03e16dc3a60e93f2">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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108 https://depot.galaxyproject.org/software/ctc/ctc_1.44.0_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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109 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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110 <package sha256sum="d16ad5910aee6247990a19745511a5d50e19fa8c236000cbf99395e06c73c9f8">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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111 https://depot.galaxyproject.org/software/BiocGenerics/BiocGenerics_0.14.0_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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112 </package>
1
e7df326a23e6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit d73994a18221073f2120deb17e8d2dfa25e6134e
iuc
parents: 0
diff changeset
113 <package sha256sum="1191c0022bcba15e5b896f6197ac91bc7fb4679e150e9c32ad4181a812ec74f1">
0
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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114 https://depot.galaxyproject.org/software/Biobase/Biobase_2.30.0_src_all.tar.gz
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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115 </package>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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116 </action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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117
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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118 <action type="shell_command">sed -i.bak -e 's/-ltinfo//' trinity-plugins/Makefile</action> <!-- tinfo is included in ncurses lib-->
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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119 <action type="shell_command">sed -i.bak 's/\(trinity_essentials:.*\) samtools/\1/' trinity-plugins/Makefile</action> <!-- samtools does not compile with package_zlib_1_2_8, but does not need to be built -->
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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120 <action type="shell_command">sed -i.bak -e '/tar xvf samtools-0.1.19.tar.bz2/a \\tsed -i.bak -e "s|-lcurses|-lncurses|" samtools-0.1.19/Makefile samtools-0.1.19/Makefile' trinity-plugins/Makefile</action> <!-- ncurses instead of curses -->
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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121
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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122 <action type="shell_command">make</action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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123 <action type="shell_command">make plugins</action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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124
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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125 <action type="move_file">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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126 <source>Trinity</source>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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127 <destination>$INSTALL_DIR</destination>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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128 </action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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129 <action type="move_directory_files">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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130 <source_directory>Analysis</source_directory>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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131 <destination_directory>$INSTALL_DIR/Analysis</destination_directory>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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132 </action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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133 <action type="move_directory_files">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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134 <source_directory>Butterfly</source_directory>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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135 <destination_directory>$INSTALL_DIR/Butterfly</destination_directory>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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136 </action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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137 <action type="move_directory_files">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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138 <source_directory>Chrysalis</source_directory>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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139 <destination_directory>$INSTALL_DIR/Chrysalis</destination_directory>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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140 </action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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141 <action type="move_directory_files">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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142 <source_directory>Inchworm</source_directory>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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143 <destination_directory>$INSTALL_DIR/Inchworm</destination_directory>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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144 </action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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145 <action type="move_directory_files">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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146 <source_directory>PerlLib</source_directory>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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147 <destination_directory>$INSTALL_DIR/PerlLib</destination_directory>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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148 </action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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149 <action type="move_directory_files">
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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150 <source_directory>trinity-plugins</source_directory>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
iuc
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151 <destination_directory>$INSTALL_DIR/trinity-plugins</destination_directory>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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152 </action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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153 <action type="move_directory_files">
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154 <source_directory>util</source_directory>
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155 <destination_directory>$INSTALL_DIR/util</destination_directory>
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156 </action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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157
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158 <action type="shell_command">rm $INSTALL_DIR/trinity-plugins/*tar.gz</action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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159
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160 <action type="set_environment">
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161 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/</environment_variable>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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162 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/util</environment_variable>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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163 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/trinity-plugins/collectl/bin</environment_variable>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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164 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/trinity-plugins/fastool</environment_variable>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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165 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/trinity-plugins/jellyfish/bin</environment_variable>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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166 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/trinity-plugins/parafly/bin</environment_variable>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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167 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/trinity-plugins/Trimmomatic</environment_variable>
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168 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/trinity-plugins/slclust/bin</environment_variable>
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169 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/trinity-plugins/GAL_0.2.1</environment_variable>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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170 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/trinity-plugins/BIN</environment_variable>
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171 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/trinity-plugins/htslib</environment_variable>
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172 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/Analysis/DifferentialExpression</environment_variable>
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173 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/util/support_scripts/</environment_variable>
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174 </action>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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175 </actions>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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176 </install>
58d411f36881 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_2_0 commit baff3f60cf4a039a74091e24b3453f4499cfaf02
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177 </package>
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178 </tool_dependency>