Mercurial > repos > iuc > package_tpp_4_8_0

comparison tool_dependencies.xml @ 2:3d56da50b195 draft default tip

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author iuc
date Wed, 29 Apr 2015 22:45:55 -0400
parents 8dcea6d6341e
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1:8dcea6d6341e 2:3d56da50b195
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="trans_proteomic_pipeline" version="4.8.0"> 3 <package name="trans_proteomic_pipeline" version="4.8.0">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions architecture="x86_64" os="linux"> 5 <actions_group>
6 <action type="download_by_url">http://share.gruenings.eu/tpp-4.8.0-Linux-x86_64.tar.gz</action> 6 <actions architecture="x86_64" os="linux">
7 <action type="shell_command">rm tpp-4.8.0-Linux-x86_64.tar.gz</action> 7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/tpp/tpp-4.8.0-Linux-x86_64.tar.gz</action>
8 <action type="move_directory_files"> 8 <action type="shell_command">rm tpp-4.8.0-Linux-x86_64.tar.gz</action>
9 <source_directory>.</source_directory> 9 <action type="move_directory_files">
10 <destination_directory>$INSTALL_DIR</destination_directory> 10 <source_directory>.</source_directory>
11 </action> 11 <destination_directory>$INSTALL_DIR</destination_directory>
12 <action type="set_environment"> 12 </action>
13 <environment_variable action="set_to" name="TPP_ROOT_PATH">$INSTALL_DIR</environment_variable> 13 <action type="set_environment">
14 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable> 14 <environment_variable action="set_to" name="TPP_ROOT_PATH">$INSTALL_DIR</environment_variable>
15 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable> 15 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable>
16 </action> 16 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable>
17 </actions> 17 </action>
18 </actions>
19 </actions_group>
18 </install> 20 </install>
19 <readme> 21 <readme>
20 Installs and complils the trans proteomic pipeline in version 4.8.0. 22 Installs and complils the trans proteomic pipeline in version 4.8.0.
21 The Trans-Proteomic Pipeline (TPP) is a collection of integrated tools for MS/MS proteomics, developed at the SPC. 23 The Trans-Proteomic Pipeline (TPP) is a collection of integrated tools for MS/MS proteomics, developed at the SPC.
22 24