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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="trans_proteomic_pipeline" version="4.8.0">
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4 <install version="1.0">
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5 <actions architecture="x86_64" os="linux">
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6 <action type="download_by_url">http://share.gruenings.eu/tpp-4.8.0-Linux-x86_64.tar.gz</action>
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7 <action type="shell_command">rm tpp-4.8.0-Linux-x86_64.tar.gz</action>
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8 <action type="move_directory_files">
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9 <source_directory>.</source_directory>
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10 <destination_directory>$INSTALL_DIR</destination_directory>
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11 </action>
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12 <action type="set_environment">
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13 <environment_variable action="set_to" name="TPP_ROOT_PATH">$INSTALL_DIR</environment_variable>
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14 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable>
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15 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable>
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16 </action>
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17 </actions>
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18 </install>
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19 <readme>
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20 Installs and complils the trans proteomic pipeline in version 4.8.0.
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21 The Trans-Proteomic Pipeline (TPP) is a collection of integrated tools for MS/MS proteomics, developed at the SPC.
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22
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23 http://tools.proteomecenter.org/
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24
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25 TPP_ROOT_PATH will point to the root path of the installation.
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26 </readme>
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27 </package>
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28 </tool_dependency>
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