Mercurial > repos > iuc > package_tpp_4_7_0

comparison tool_dependencies.xml @ 10:a5d93ac27cfe draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_7_0 commit 97a064489364118d108b0dd2cfb4d9bc53080837
author iuc
date Thu, 19 Nov 2015 14:42:35 -0500
parents 5d695df7cfa1
children 9f606e975d00
comparison
equal deleted inserted replaced
9:5d695df7cfa1 10:a5d93ac27cfe
8 </package> 8 </package>
9 <package name="expat" version="2.1.0"> 9 <package name="expat" version="2.1.0">
10 <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="bzlib" version="1.0.6"> 12 <package name="bzlib" version="1.0.6">
13 <repository changeset_revision="7ebd16eeff6b" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="29f79feefc77" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package> 14 </package>
15 <package name="libpng" version="1.2.5"> 15 <package name="libpng" version="1.2.5">
16 <repository changeset_revision="8813649bf702" name="package_libpng_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="8813649bf702" name="package_libpng_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17 </package> 17 </package>
18 <package name="boost" version="1.55.0"> 18 <package name="boost" version="1.55.0">
19 <repository changeset_revision="8bf1336e52a1" name="package_boost_1_55" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 19 <repository changeset_revision="214c7835ee91" name="package_boost_1_55" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
20 </package> 20 </package>
21 <package name="e2fsprogs" version="1.42.9"> 21 <package name="e2fsprogs" version="1.42.9">
22 <repository changeset_revision="13445e8c7fd8" name="package_e2fsprogs_1_42_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 22 <repository changeset_revision="13445e8c7fd8" name="package_e2fsprogs_1_42_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
23 </package> 23 </package>
24 <package name="trans_proteomic_pipeline" version="4.7.0"> 24 <package name="trans_proteomic_pipeline" version="4.7.0">
48 <package name="libgd" version="2.1.0" /> 48 <package name="libgd" version="2.1.0" />
49 </repository> 49 </repository>
50 <repository changeset_revision="8813649bf702" name="package_libpng_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 50 <repository changeset_revision="8813649bf702" name="package_libpng_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
51 <package name="libpng" version="1.2.5" /> 51 <package name="libpng" version="1.2.5" />
52 </repository> 52 </repository>
53 <repository changeset_revision="7ebd16eeff6b" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 53 <repository changeset_revision="29f79feefc77" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
54 <package name="bzlib" version="1.0.6" /> 54 <package name="bzlib" version="1.0.6" />
55 </repository> 55 </repository>
56 <repository changeset_revision="8bf1336e52a1" name="package_boost_1_55" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 56 <repository changeset_revision="214c7835ee91" name="package_boost_1_55" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
57 <package name="boost" version="1.55.0" /> 57 <package name="boost" version="1.55.0" />
58 </repository> 58 </repository>
59 <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 59 <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
60 <package name="expat" version="2.1.0" /> 60 <package name="expat" version="2.1.0" />
61 </repository> 61 </repository>
109 --> 109 -->
110 <!--<action type="shell_command">sed -i.bak -e 's/qw(.*) /(&amp;) /' ../perl/tpp_models.pl</action>--> 110 <!--<action type="shell_command">sed -i.bak -e 's/qw(.*) /(&amp;) /' ../perl/tpp_models.pl</action>-->
111 <action type="shell_command">sed -i.bak -e 's/qw(.*) /(&amp;) /' ../CGI/show_nspbin.pl</action> 111 <action type="shell_command">sed -i.bak -e 's/qw(.*) /(&amp;) /' ../CGI/show_nspbin.pl</action>
112 <action type="shell_command">sed -i.bak -e 's/qw(.*) /(&amp;) /' ../perl/exporTPP.pl</action> 112 <action type="shell_command">sed -i.bak -e 's/qw(.*) /(&amp;) /' ../perl/exporTPP.pl</action>
113 <action type="shell_command">echo '' &gt; ../perl/tpp_models.pl</action> 113 <action type="shell_command">echo '' &gt; ../perl/tpp_models.pl</action>
114 114 <action type="make_install" />
115 <action type="shell_command">make</action>
116 <action type="shell_command">make install</action>
117 <action type="set_environment"> 115 <action type="set_environment">
118 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/tpp/bin</environment_variable> 116 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/tpp/bin</environment_variable>
119 <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5</environment_variable> 117 <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5</environment_variable>
120 <environment_variable action="set_to" name="TPP_ROOT_PATH">$INSTALL_DIR</environment_variable> 118 <environment_variable action="set_to" name="TPP_ROOT_PATH">$INSTALL_DIR</environment_variable>
121 </action> 119 </action>