Mercurial > repos > iuc > package_scikit_learn_0_13

comparison tool_dependencies.xml @ 1:84b82d4df8b8 draft

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author bgruening
date Thu, 12 Sep 2013 07:19:26 -0400
parents a05da181571f
children 4779579ef7e2
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0:a05da181571f 1:84b82d4df8b8
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="lapack" version="3.4.2"> 3 <package name="lapack" version="3.4.2">
4 <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="60957bd68fe2" name="package_lapack_3_4" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="atlas" version="3.10.1"> 6 <package name="atlas" version="3.10.1">
7 <repository changeset_revision="25dc49b0d6d5" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="3508de0ebae1" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="numpy" version="1.7.1"> 9 <package name="numpy" version="1.7.1">
10 <repository changeset_revision="ad6ebe2c75ef" name="package_numpy_1_7" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="b7ff4a8c58df" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="scipy" version="0.12.0"> 12 <package name="scipy" version="0.12.0">
13 <repository changeset_revision="e4f395310680" name="package_scipy_0_12" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="8ed7d7b6907a" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
14 </package> 14 </package>
15 <package name="matplotlib" version="1.2.1"> 15 <package name="matplotlib" version="1.2.1">
16 <repository changeset_revision="c888aa8ed318" name="package_matplotlib_1_2" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
17 </package> 17 </package>
18 18
19 <package name="scikit_learn" version="0.13.1"> 19 <package name="scikit_learn" version="0.13.1">
20 <install version="1.0"> 20 <install version="1.0">
21 <actions> 21 <actions>
22 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.13.1.tar.gz</action> 22 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.13.1.tar.gz</action>
23 <action type="set_environment_for_install"> 23 <action type="set_environment_for_install">
24 <repository changeset_revision="25dc49b0d6d5" name="package_atlas_3_10" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> 24 <repository changeset_revision="3508de0ebae1" name="package_atlas_3_10" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
25 <package name="atlas" version="3.10.1" /> 25 <package name="atlas" version="3.10.1" />
26 </repository> 26 </repository>
27 <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> 27 <repository changeset_revision="60957bd68fe2" name="package_lapack_3_4" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
28 <package name="lapack" version="3.4.2" /> 28 <package name="lapack" version="3.4.2" />
29 </repository> 29 </repository>
30 <repository changeset_revision="ad6ebe2c75ef" name="package_numpy_1_7" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> 30 <repository changeset_revision="b7ff4a8c58df" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
31 <package name="numpy" version="1.7.1" /> 31 <package name="numpy" version="1.7.1" />
32 </repository> 32 </repository>
33 <repository changeset_revision="e4f395310680" name="package_scipy_0_12" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> 33 <repository changeset_revision="8ed7d7b6907a" name="package_scipy_0_12" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
34 <package name="scipy" version="0.12.0" /> 34 <package name="scipy" version="0.12.0" />
35 </repository> 35 </repository>
36 <repository changeset_revision="c888aa8ed318" name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> 36 <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
37 <package name="matplotlib" version="1.2.1" /> 37 <package name="matplotlib" version="1.2.1" />
38 </repository> 38 </repository>
39 </action> 39 </action>
40 40
41 <action type="make_directory">$INSTALL_DIR/lib/python</action> 41 <action type="make_directory">$INSTALL_DIR/lib/python</action>
42 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 42 <action language="cheetah" type="template_command">
43 export BLAS=$LAPACK_LIB_DIR/libblas.a &amp;&amp; 43 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python &amp;&amp;
44 export LAPACK=$LAPACK_LIB_DIR/liblapack.a &amp;&amp;
45 export ATLAS=$ATLAS_LIB_DIR/libatlas.a &amp;&amp;
46 export PATH=$PATH:$PATH_NUMPY &amp;&amp;
47 export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_SCIPY:$PYTHONPATH_MATPLOTLIB &amp;&amp;
48 44
49 python setup.py install --home $INSTALL_DIR</action> 45 #if env.get('ATLAS_LIB_DIR', False):
46 export ATLAS=$env.ATLAS_LIB_DIR/libatlas.a &amp;&amp;
47 #end if
48 #if env.get('LAPACK_LIB_DIR', False):
49 export BLAS=$env.LAPACK_LIB_DIR/libblas.a &amp;&amp;
50 export LAPACK=$env.LAPACK_LIB_DIR/liblapack.a &amp;&amp;
51 #end if
52
53 export PATH=\$PATH:$env.PATH_NUMPY &amp;&amp;
54 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB &amp;&amp;
55
56 python setup.py install --install-lib $env.INSTALL_DIR/lib/python
57 </action>
50 <action type="set_environment"> 58 <action type="set_environment">
51 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 59 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
52 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 60 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
53 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> 61 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
54 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> 62 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>