Mercurial > repos > iuc > package_sailfish_0_6
annotate tool_dependencies.xml @ 8:66b8e701b6ee draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sailfish_0_6 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
| author | iuc |
|---|---|
| date | Tue, 22 Dec 2015 19:37:49 -0500 |
| parents | 2f067433b787 |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="boost" version="1.53.0"> | |
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66b8e701b6ee
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sailfish_0_6 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
7
diff
changeset
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4 <repository changeset_revision="a534981960ca" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 5 </package> |
| 6 | |
| 7 <package name="sailfish" version="0.6.3"> | |
| 8 <install version="1.0"> | |
| 9 <actions> | |
| 10 <!-- first action is always downloading --> | |
| 11 <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/archive/v0.6.3.tar.gz</action> | |
| 12 | |
| 13 <!-- populate the environment variables from the dependend repos --> | |
| 14 <action type="set_environment_for_install"> | |
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8
66b8e701b6ee
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sailfish_0_6 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
7
diff
changeset
|
15 <repository changeset_revision="a534981960ca" name="package_boost_1_53" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 16 <package name="boost" version="1.53.0" /> |
| 17 </repository> | |
| 18 </action> | |
| 19 | |
| 20 <!-- PYTHONPATH_NUMPY is set in the numpy package --> | |
| 21 <action type="shell_command"> | |
| 22 mkdir build && | |
| 23 cd build && | |
| 24 cmake .. -DBOOST_ROOT=$BOOST_ROOT_DIR -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR</action> | |
| 25 <action type="shell_command">cd ./build && make </action> | |
| 26 <action type="shell_command">cd ./build && make install</action> | |
| 27 | |
| 28 <action type="set_environment"> | |
| 29 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable> | |
| 30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 31 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[BOOST_ROOT_DIR]/lib/</environment_variable> | |
| 32 </action> | |
| 33 </actions> | |
| 34 </install> | |
| 35 <readme>Compiling sailfish requires cmake and C++11 compiler (usually gcc).</readme> | |
| 36 </package> | |
| 37 </tool_dependency> |