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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="boost" version="1.53.0">
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4 <repository changeset_revision="7cc7949148d5" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6
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7 <package name="sailfish" version="0.6.3">
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8 <install version="1.0">
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9 <actions>
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10 <!-- first action is always downloading -->
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11 <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/archive/v0.6.3.tar.gz</action>
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12
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13 <!-- populate the environment variables from the dependend repos -->
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14 <action type="set_environment_for_install">
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15 <repository changeset_revision="7cc7949148d5" name="package_boost_1_53" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
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16 <package name="boost" version="1.53.0" />
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17 </repository>
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18 </action>
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19
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20 <!-- PYTHONPATH_NUMPY is set in the numpy package -->
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21 <action type="shell_command">
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22 mkdir build &&
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23 cd build &&
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24 cmake .. -DBOOST_ROOT=$BOOST_ROOT_DIR -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR</action>
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25 <action type="shell_command">cd ./build && make </action>
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26 <action type="shell_command">cd ./build && make install</action>
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27
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28 <action type="set_environment">
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29 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable>
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30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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31 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[BOOST_ROOT_DIR]/lib/</environment_variable>
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32 </action>
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33 </actions>
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34 </install>
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35 <readme>Compiling sailfish requires cmake and C++11 compiler (usually gcc).</readme>
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36 </package>
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37 </tool_dependency>
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