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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="rnastructure" version="5.7">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://depot.galaxyproject.org/package/source/RNAstructure-5.7.tgz</action>
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7 <action type="shell_command">make all</action>
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8 <action type="move_directory_files">
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9 <source_directory>.</source_directory>
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10 <destination_directory>$INSTALL_DIR</destination_directory>
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11 </action>
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12 <action type="set_environment">
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13 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/exe</environment_variable>
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14 <environment_variable action="set_to" name="DATAPATH">$INSTALL_DIR/data_tables</environment_variable>
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15 </action>
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16 </actions>
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17 </install>
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18 <readme>
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19 <![CDATA[
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20 RNAstructure is a complete package for RNA and DNA secondary structure
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21 prediction and analysis. It includes algorithms for secondary structure
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22 prediction, including facility to predict base pairing probabilities. It
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23 also can be used to predict bimolecular structures and can predict the
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24 equilibrium binding affinity of an oligonucleotide to a structured RNA
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25 target. This is useful for siRNA design. It can also predict secondary
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26 structures common to two, unaligned sequences, which is much more accurate
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27 than single sequence secondary structure prediction. Finally, RNAstructure
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28 can take a number of different types of experiment mapping data to constrain
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29 or restrain structure prediction. These include chemical mapping, enzymatic
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30 mapping, NMR, and SHAPE data.
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31 ]]>
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32 </readme>
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33 </package>
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34 </tool_dependency>
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