Mercurial > repos > iuc > package_r_3_2_0
diff tool_dependencies.xml @ 5:d973c8e9b29e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_2_0 commit ec34b8cb4b41c0aa114475c262100409236d2bf2-dirty
| author | iuc |
|---|---|
| date | Sun, 26 Jul 2015 16:02:05 -0400 |
| parents | be3f2a89a9fc |
| children | 11baf5863be2 |
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--- a/tool_dependencies.xml Sun Jul 26 15:43:34 2015 -0400 +++ b/tool_dependencies.xml Sun Jul 26 16:02:05 2015 -0400 @@ -13,6 +13,20 @@ <environment_variable action="set_to" name="TCL_LIBRARY">$INSTALL_DIR/lib/libtcl8.4.so</environment_variable> <environment_variable action="set_to" name="TK_LIBRARY">$INSTALL_DIR/lib/libtk8.4.so</environment_variable> </action> + <action type="shell_command"><![CDATA[ + command -v gfortran || return 0 + BUNDLED_LGF_CANON=$INSTALL_DIR/lib/libgfortran.so.3.0.0 && + BUNDLED_LGF_VERS=`objdump -p $BUNDLED_LGF_CANON | grep GFORTRAN_1 | sed -r 's/.*GFORTRAN_1\.([0-9])+/\1/' | sort -n | tail -1` && + echo 'program test; end program test' > test.f90 && + gfortran -o test test.f90 && + LGF=`ldd test | grep libgfortran | awk '{print $3}'` && + LGF_CANON=`readlink -f $LGF` && + LGF_VERS=`objdump -p $LGF_CANON | grep GFORTRAN_1 | sed -r 's/.*GFORTRAN_1\.([0-9])+/\1/' | sort -n | tail -1` && + if [ $LGF_VERS -gt $BUNDLED_LGF_VERS ]; then + cp -p $BUNDLED_LGF_CANON ${BUNDLED_LGF_CANON}.bundled && + cp -p $LGF_CANON $BUNDLED_LGF_CANON + fi + ]]></action> </actions> <actions architecture="x86_64" os="darwin"> <action type="download_by_url">https://cran.rstudio.com/src/base/R-3/R-3.2.0.tar.gz</action>