Mercurial > repos > iuc > package_r_3_2_0

comparison tool_dependencies.xml @ 5:d973c8e9b29e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_2_0 commit ec34b8cb4b41c0aa114475c262100409236d2bf2-dirty
author iuc
date Sun, 26 Jul 2015 16:02:05 -0400
parents be3f2a89a9fc
children 11baf5863be2
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4:be3f2a89a9fc 5:d973c8e9b29e
11 </action> 11 </action>
12 <action type="set_environment"> 12 <action type="set_environment">
13 <environment_variable action="set_to" name="TCL_LIBRARY">$INSTALL_DIR/lib/libtcl8.4.so</environment_variable> 13 <environment_variable action="set_to" name="TCL_LIBRARY">$INSTALL_DIR/lib/libtcl8.4.so</environment_variable>
14 <environment_variable action="set_to" name="TK_LIBRARY">$INSTALL_DIR/lib/libtk8.4.so</environment_variable> 14 <environment_variable action="set_to" name="TK_LIBRARY">$INSTALL_DIR/lib/libtk8.4.so</environment_variable>
15 </action> 15 </action>
16 <action type="shell_command"><![CDATA[
17 command -v gfortran || return 0
18 BUNDLED_LGF_CANON=$INSTALL_DIR/lib/libgfortran.so.3.0.0 &&
19 BUNDLED_LGF_VERS=`objdump -p $BUNDLED_LGF_CANON | grep GFORTRAN_1 | sed -r 's/.*GFORTRAN_1\.([0-9])+/\1/' | sort -n | tail -1` &&
20 echo 'program test; end program test' > test.f90 &&
21 gfortran -o test test.f90 &&
22 LGF=`ldd test | grep libgfortran | awk '{print $3}'` &&
23 LGF_CANON=`readlink -f $LGF` &&
24 LGF_VERS=`objdump -p $LGF_CANON | grep GFORTRAN_1 | sed -r 's/.*GFORTRAN_1\.([0-9])+/\1/' | sort -n | tail -1` &&
25 if [ $LGF_VERS -gt $BUNDLED_LGF_VERS ]; then
26 cp -p $BUNDLED_LGF_CANON ${BUNDLED_LGF_CANON}.bundled &&
27 cp -p $LGF_CANON $BUNDLED_LGF_CANON
28 fi
29 ]]></action>
16 </actions> 30 </actions>
17 <actions architecture="x86_64" os="darwin"> 31 <actions architecture="x86_64" os="darwin">
18 <action type="download_by_url">https://cran.rstudio.com/src/base/R-3/R-3.2.0.tar.gz</action> 32 <action type="download_by_url">https://cran.rstudio.com/src/base/R-3/R-3.2.0.tar.gz</action>
19 33
20 <package name="readline" version="6.2"> 34 <package name="readline" version="6.2">