Mercurial > repos > iuc > package_r_3_1_1

annotate tool_dependencies.xml @ 3:e2fb38782bf5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
author iuc
date Mon, 04 Jan 2016 05:40:06 -0500
parents 9688b7af58d0
children a3a99aa3ce01
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1 <?xml version="1.0"?>
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2 <tool_dependency>
3
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3 <package name="readline" version="6.2">
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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4 <repository changeset_revision="1007a3015bdb" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="libpng" version="1.6.7">
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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7 <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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8 </package>
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9 <package name="cairo" version="1.12.14">
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10 <repository changeset_revision="8f011e7388e1" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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11 </package>
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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12 <package name="pixman" version="0.32.4">
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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13 <repository changeset_revision="bcf53d429118" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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14 </package>
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15 <package name="freetype" version="2.5.2">
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16 <repository changeset_revision="34ebf47e4941" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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17 </package>
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18 <package name="ncurses" version="5.9">
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19 <repository changeset_revision="47ad4d7ba9fe" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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20 </package>
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21 <package name="R" version="3.1.1">
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22 <install version="1.0">
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23 <actions>
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24 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.1.1.tar.gz</action>
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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25 <action type="set_environment_for_install">
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26 <repository changeset_revision="1007a3015bdb" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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27 <package name="readline" version="6.2" />
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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28 </repository>
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29 <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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30 <package name="libpng" version="1.6.7" />
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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31 </repository>
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32 <repository changeset_revision="8f011e7388e1" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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33 <package name="cairo" version="1.12.14" />
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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34 </repository>
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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35 <repository changeset_revision="bcf53d429118" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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36 <package name="pixman" version="0.32.4" />
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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37 </repository>
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38 <repository changeset_revision="34ebf47e4941" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
e2fb38782bf5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_1 commit 630c0f1ac3419322998d92a1653f260c664283ab
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39 <package name="freetype" version="2.5.2" />
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40 </repository>
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41 <repository changeset_revision="47ad4d7ba9fe" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
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42 <package name="ncurses" version="5.9" />
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43 </repository>
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44 </action>
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45 <action type="autoconf">--with-tcltk --with-blas --with-lapack --with-readline --with-cairo --with-libpng --without-x --without-aqua --enable-R-shlib --disable-R-framework --libdir=$INSTALL_DIR/lib</action>
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46 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action>
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47 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action>
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48 <action type="set_environment">
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49 <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/lib/R/doc</environment_variable>
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50 <environment_variable action="set_to" name="R_HOME_DIR">$INSTALL_DIR/lib/R</environment_variable>
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51 <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable>
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52 <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable>
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53 <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable>
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54 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
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55 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>
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56 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
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57 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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58 </action>
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59 </actions>
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60 </install>
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61 <readme>
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62 Using Rstudio cran which seems to be properly versioned.
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63 darwin needs work - I have no mac access...
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64 R is a free software environment for statistical computing and graphics.
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65 NOTE: See custom compilation options above.
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66 </readme>
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67 </package>
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68 </tool_dependency>