Mercurial > repos > iuc > package_r_3_0_2
annotate tool_dependencies.xml @ 7:223aadc3d216 draft
Uploaded
| author | iuc |
|---|---|
| date | Wed, 18 Feb 2015 11:33:14 -0500 |
| parents | b6fe8ca3230d |
| children | 1446a57edde6 |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 7 | 3 <package name="readline" version="6.2"> |
| 4 <repository changeset_revision="4e4f3dc94efa" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="ncurses" version="5.9"> | |
| 7 <repository changeset_revision="c0735727b530" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <package name="libpng" version="1.6.7"> | |
| 10 <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 11 </package> | |
| 1 | 12 <package name="R_3_0_2" version="3.0.2"> |
| 0 | 13 <install version="1.0"> |
| 7 | 14 <actions> |
| 15 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.2.tar.gz</action> | |
| 16 <action type="set_environment_for_install"> | |
| 17 <repository changeset_revision="4e4f3dc94efa" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 18 <package name="readline" version="6.2" /> | |
| 19 </repository> | |
| 20 <repository changeset_revision="c0735727b530" name="package_ncurses_5_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 21 <package name="ncurses" version="5.9" /> | |
| 22 </repository> | |
| 23 <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 24 <package name="libpng" version="1.6.7" /> | |
| 25 </repository> | |
| 26 </action> | |
| 27 | |
| 28 <action type="shell_command"> | |
| 29 ./configure CPPFLAGS="-I$READLINE_INCLUDE_PATH -I${LIBPNG_ROOT}/include" LDFLAGS="-L$READLINE_LIB_PATH -L$NCURSES_LIB_PATH -L${LIBPNG_ROOT}/lib -lreadline -lncurses" --with-libpng --enable-R-shlib --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR --datarootdir=$INSTALL_DIR/share/ | |
| 30 </action> | |
| 31 | |
| 32 <action type="shell_command">make</action> | |
| 33 <action type="shell_command">make install</action> | |
| 5 | 34 <action type="set_environment"> |
| 7 | 35 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR</environment_variable> |
| 36 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> | |
| 37 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable> | |
| 38 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable> | |
|
6
b6fe8ca3230d
Added $RHOME environment variable
devteam <devteam@galaxyproject.org>
parents:
5
diff
changeset
|
39 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable> |
| 7 | 40 <environment_variable action="set_to" name="R_PATH">$INSTALL_DIR/lib/R/bin</environment_variable> |
| 0 | 41 </action> |
| 7 | 42 </actions> |
| 0 | 43 </install> |
| 7 | 44 <readme>R is a free software environment for statistical computing and graphics. http://www.r-project.org/</readme> |
| 0 | 45 </package> |
| 46 </tool_dependency> |