Mercurial > repos > iuc > package_r_3_0_1

annotate tool_dependencies.xml @ 18:aea2a3f2bcd5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_1 commit 48fbe322d0f3ec023186989104ae4f4188b03a1d
author iuc
date Mon, 01 Jun 2015 22:41:46 -0400
parents 7f5cc10e1a22
children e5c96827ef85
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="readline" version="6.2">
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aea2a3f2bcd5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_1 commit 48fbe322d0f3ec023186989104ae4f4188b03a1d
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4 <repository changeset_revision="cbd5de2c9a7e" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="ncurses" version="5.9">
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7 <repository changeset_revision="5b79af8b6396" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="R_3_0_1" version="3.0.1">
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10 <install version="1.0">
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11 <actions>
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12 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action>
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13 <action type="set_environment_for_install">
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14 <repository changeset_revision="cbd5de2c9a7e" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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15 <package name="readline" version="6.2" />
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16 </repository>
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17 <repository changeset_revision="5b79af8b6396" name="package_ncurses_5_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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18 <package name="ncurses" version="5.9" />
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19 </repository>
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20 </action>
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22 <action type="shell_command">
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23 ./configure CPPFLAGS=-I$READLINE_INCLUDE_PATH LDFLAGS="-L$READLINE_LIB_PATH -L$NCURSES_LIB_PATH -lreadline -lncurses" --enable-R-shlib --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR/bin/ --datarootdir=$INSTALL_DIR/share/
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24 </action>
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25 <action type="shell_command">make</action>
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26 <action type="shell_command">make install</action>
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27 <action type="set_environment">
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28 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR</environment_variable>
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29 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
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30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
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31 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable>
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32 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>
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33 <environment_variable action="set_to" name="R_PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
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34 </action>
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35 </actions>
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36 </install>
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37 <readme>R is a free software environment for statistical computing and graphics. http://www.r-project.org/</readme>
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38 </package>
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39 </tool_dependency>