Mercurial > repos > iuc > package_python_2_7_scikit_learn_0_16
annotate tool_dependencies.xml @ 1:04af931e5951 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
| author | iuc |
|---|---|
| date | Fri, 09 Oct 2015 05:26:18 -0400 |
| parents | ccac7b23cc52 |
| children | d4ddc468046b |
| rev | line source |
|---|---|
|
0
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
1 <?xml version="1.0"?> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
2 <tool_dependency> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
3 <package name="python" version="2.7.10"> |
|
1
04af931e5951
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
0
diff
changeset
|
4 <repository changeset_revision="e372b77da7be" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
|
0
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
5 </package> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
6 <package name="numpy" version="1.9"> |
|
1
04af931e5951
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
0
diff
changeset
|
7 <repository changeset_revision="c557e8b3a320" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
|
0
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
8 </package> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
9 <package name="scipy" version="0.14"> |
|
1
04af931e5951
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
0
diff
changeset
|
10 <repository changeset_revision="10a6799b6a27" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
|
0
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
11 </package> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
12 <package name="matplotlib" version="1.4"> |
|
1
04af931e5951
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
0
diff
changeset
|
13 <repository changeset_revision="f420f862153e" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
|
0
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
14 </package> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
15 <package name="scikit_learn" version="0.16"> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
16 <install version="1.0"> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
17 <actions> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
18 <action type="setup_python_environment"> |
|
1
04af931e5951
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
0
diff
changeset
|
19 <repository changeset_revision="e372b77da7be" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
|
0
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
20 <package name="python" version="2.7.10" /> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
21 </repository> |
|
1
04af931e5951
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
0
diff
changeset
|
22 <repository changeset_revision="c557e8b3a320" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
|
0
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
23 <package name="numpy" version="1.9" /> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
24 </repository> |
|
1
04af931e5951
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
0
diff
changeset
|
25 <repository changeset_revision="10a6799b6a27" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
|
0
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
26 <package name="scipy" version="0.14" /> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
27 </repository> |
|
1
04af931e5951
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
0
diff
changeset
|
28 <repository changeset_revision="f420f862153e" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
|
0
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
29 <package name="matplotlib" version="1.4" /> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
30 </repository> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
31 <!-- allow downloading and installing an Python package from https://pypi.org/ --> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
32 <package md5sum="363ddda501e3b6b61726aa40b8dbdb7e">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.16.1.tar.gz</package> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
33 </action> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
34 |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
35 <action type="set_environment"> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
36 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
37 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
38 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
39 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
40 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
41 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
42 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
43 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR</environment_variable> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
44 </action> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
45 </actions> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
46 </install> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
47 <readme> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
48 Compiling scikit-learn requires a C compiler (typically gcc). |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
49 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN. |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
50 |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
51 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
52 </readme> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
53 </package> |
|
ccac7b23cc52
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_16 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
iuc
parents:
diff
changeset
|
54 </tool_dependency> |
