--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Oct 05 18:26:54 2015 -0400
@@ -0,0 +1,80 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="numpy" version="1.9">
+        <repository changeset_revision="8d42102c4e36" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="python" version="2.7.10">
+        <repository changeset_revision="08162f8bc496" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="pandas" version="0.16">
+        <repository changeset_revision="2b6c63eac255" name="package_python_2_7_pandas_0_16" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="matplotlib" version="1.4">
+        <repository changeset_revision="7e97b496667d" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="scipy" version="0.14">
+        <repository changeset_revision="7002d3382856" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="requests" version="2.7">
+        <repository changeset_revision="e96b649190ad" name="package_python_2_7_requests_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+
+
+    <package name="qiime" version="1.9.1">
+        <install version="1.0">
+            <actions>
+                <action type="setup_python_environment">
+                    <repository changeset_revision="08162f8bc496" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="python" version="2.7.10" />
+                    </repository>
+                    <repository changeset_revision="8d42102c4e36" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="numpy" version="1.9" />
+                    </repository>
+                    <repository changeset_revision="2b6c63eac255" name="package_python_2_7_pandas_0_16" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="pandas" version="0.16" />
+                    </repository>
+                    <repository changeset_revision="7e97b496667d" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="matplotlib" version="1.4" />
+                    </repository>
+                    <repository changeset_revision="7002d3382856" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="scipy" version="0.14" />
+                    </repository>
+                    <repository changeset_revision="e96b649190ad" name="package_python_2_7_requests_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="requests" version="2.7" />
+                    </repository>
+                    <!-- allow downloading and installing an Python package from https://pypi.org/ -->
+
+                    <package md5sum="27d6f711ae0db6cfd1eb37f95621dfb5">https://pypi.python.org/packages/source/b/bz2file/bz2file-0.98.tar.gz</package>
+                    <package md5sum="ecdfa0bc89e0c04c9d4d39cac9984498">https://pypi.python.org/packages/source/c/cogent/cogent-1.5.3.tgz</package>
+                    <package md5sum="ef2c4d6e2c5dc0458fe604a91f721aaa">https://pypi.python.org/packages/source/n/natsort/natsort-4.0.3.tar.gz</package>
+                    <package md5sum="6f1744d8d3f333eb2dbe81026d4dcb1b">https://pypi.python.org/packages/source/p/pynast/pynast-1.2.2.tar.gz</package>
+                    <package md5sum="f949d1aef3d17d022dbc7105ade1851e">https://pypi.python.org/packages/source/b/biom-format/biom-format-2.1.4.tar.gz</package>
+                    <package md5sum="9b763cae89fe7b938b8acab4b39b92ba">https://pypi.python.org/packages/source/e/emperor/emperor-0.9.51.tar.gz</package>
+                    <package md5sum="ea65051e674aedfad8bbfdfa63f2c4d8">https://pypi.python.org/packages/source/b/burrito-fillings/burrito-fillings-0.1.1.tar.gz</package>
+                    <package md5sum="4a5ccf5930690478de1eb881e8030bff">https://pypi.python.org/packages/source/q/qiime-default-reference/qiime-default-reference-0.1.3.tar.gz</package>
+                    <package md5sum="ea687207db25f65552061db4a2c6727d">https://pypi.python.org/packages/source/c/contextlib2/contextlib2-0.4.0.tar.gz</package>
+                    <package md5sum="a68eb3c90b3b76714c5ceb8c09ea3a06">https://pypi.python.org/packages/source/f/future/future-0.15.2.tar.gz</package>
+                    <package md5sum="4d3ad0ff07b61373d2cefc89c5d0b20b">https://pypi.python.org/packages/source/n/nose/nose-1.3.7.tar.gz</package>
+                    <package md5sum="476881ef4012262dfc8adc645ee786c4">https://pypi.python.org/packages/source/s/six/six-1.9.0.tar.gz</package>
+                    <package md5sum="ff047a16dafeaa895bedef80a74c3728">https://pypi.python.org/packages/source/p/pytz/pytz-2015.6.tar.gz</package>
+                    <package md5sum="4ef68e1c485b09e9f034e10473e5add2">https://pypi.python.org/packages/source/p/python-dateutil/python-dateutil-2.4.2.tar.gz</package>
+                    <package md5sum="dd3a0669e1e6f09699eefa2c7fbd9756">https://pypi.python.org/packages/source/d/decorator/decorator-4.0.4.tar.gz</package>
+                    <package md5sum="4bdb684f40a2e1d9e42baae4dc211074">https://pypi.python.org/packages/source/s/scikit-bio/scikit-bio-0.4.0.tar.gz</package>
+                    <package md5sum="32d4db2b2c888dbbfc6aa33f02725526">https://pypi.python.org/packages/source/q/qiime/qiime-1.9.1.tar.gz</package>
+                </action>
+
+                <action type="set_environment">
+                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
+                    <environment_variable action="set_to" name="PYTHONPATH_QIME">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="set_to" name="QIME_ROOT_PATH">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            QIIME: Quantitative Insights Into Microbial Ecology
+            http://www.qiime.org
+        </readme>
+    </package>
+</tool_dependency>