Mercurial > repos > iuc > package_python_2_7_qiime_1_9_1

comparison tool_dependencies.xml @ 0:83b54357c3c1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_qiime_1_9_1 commit cd4cb18a1b2a7679f6d1d2e87c2c1cf3ab875f55
author iuc
date Mon, 05 Oct 2015 18:26:54 -0400
parents
children 78687f642e87
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-1:000000000000 0:83b54357c3c1
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="numpy" version="1.9">
4 <repository changeset_revision="8d42102c4e36" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="python" version="2.7.10">
7 <repository changeset_revision="08162f8bc496" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="pandas" version="0.16">
10 <repository changeset_revision="2b6c63eac255" name="package_python_2_7_pandas_0_16" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="matplotlib" version="1.4">
13 <repository changeset_revision="7e97b496667d" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="scipy" version="0.14">
16 <repository changeset_revision="7002d3382856" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17 </package>
18 <package name="requests" version="2.7">
19 <repository changeset_revision="e96b649190ad" name="package_python_2_7_requests_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
20 </package>
21
22
23 <package name="qiime" version="1.9.1">
24 <install version="1.0">
25 <actions>
26 <action type="setup_python_environment">
27 <repository changeset_revision="08162f8bc496" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
28 <package name="python" version="2.7.10" />
29 </repository>
30 <repository changeset_revision="8d42102c4e36" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
31 <package name="numpy" version="1.9" />
32 </repository>
33 <repository changeset_revision="2b6c63eac255" name="package_python_2_7_pandas_0_16" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
34 <package name="pandas" version="0.16" />
35 </repository>
36 <repository changeset_revision="7e97b496667d" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
37 <package name="matplotlib" version="1.4" />
38 </repository>
39 <repository changeset_revision="7002d3382856" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
40 <package name="scipy" version="0.14" />
41 </repository>
42 <repository changeset_revision="e96b649190ad" name="package_python_2_7_requests_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
43 <package name="requests" version="2.7" />
44 </repository>
45 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
46
47 <package md5sum="27d6f711ae0db6cfd1eb37f95621dfb5">https://pypi.python.org/packages/source/b/bz2file/bz2file-0.98.tar.gz</package>
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49 <package md5sum="ef2c4d6e2c5dc0458fe604a91f721aaa">https://pypi.python.org/packages/source/n/natsort/natsort-4.0.3.tar.gz</package>
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51 <package md5sum="f949d1aef3d17d022dbc7105ade1851e">https://pypi.python.org/packages/source/b/biom-format/biom-format-2.1.4.tar.gz</package>
52 <package md5sum="9b763cae89fe7b938b8acab4b39b92ba">https://pypi.python.org/packages/source/e/emperor/emperor-0.9.51.tar.gz</package>
53 <package md5sum="ea65051e674aedfad8bbfdfa63f2c4d8">https://pypi.python.org/packages/source/b/burrito-fillings/burrito-fillings-0.1.1.tar.gz</package>
54 <package md5sum="4a5ccf5930690478de1eb881e8030bff">https://pypi.python.org/packages/source/q/qiime-default-reference/qiime-default-reference-0.1.3.tar.gz</package>
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56 <package md5sum="a68eb3c90b3b76714c5ceb8c09ea3a06">https://pypi.python.org/packages/source/f/future/future-0.15.2.tar.gz</package>
57 <package md5sum="4d3ad0ff07b61373d2cefc89c5d0b20b">https://pypi.python.org/packages/source/n/nose/nose-1.3.7.tar.gz</package>
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59 <package md5sum="ff047a16dafeaa895bedef80a74c3728">https://pypi.python.org/packages/source/p/pytz/pytz-2015.6.tar.gz</package>
60 <package md5sum="4ef68e1c485b09e9f034e10473e5add2">https://pypi.python.org/packages/source/p/python-dateutil/python-dateutil-2.4.2.tar.gz</package>
61 <package md5sum="dd3a0669e1e6f09699eefa2c7fbd9756">https://pypi.python.org/packages/source/d/decorator/decorator-4.0.4.tar.gz</package>
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63 <package md5sum="32d4db2b2c888dbbfc6aa33f02725526">https://pypi.python.org/packages/source/q/qiime/qiime-1.9.1.tar.gz</package>
64 </action>
65
66 <action type="set_environment">
67 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
68 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
69 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
70 <environment_variable action="set_to" name="PYTHONPATH_QIME">$INSTALL_DIR</environment_variable>
71 <environment_variable action="set_to" name="QIME_ROOT_PATH">$INSTALL_DIR</environment_variable>
72 </action>
73 </actions>
74 </install>
75 <readme>
76 QIIME: Quantitative Insights Into Microbial Ecology
77 http://www.qiime.org
78 </readme>
79 </package>
80 </tool_dependency>