Mercurial > repos > iuc > package_python_2_7_pysam_0_8_3

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
author iuc
date Tue, 22 Dec 2015 19:31:49 -0500
parents f88a5f4ac6c1
children
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d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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1 <?xml version="1.0"?>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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2 <tool_dependency>
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3 <package name="python" version="2.7.10">
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7ac80143c68d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
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4 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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5 </package>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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6 <package name="pysam" version="0.8.3">
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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7 <install version="1.0">
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8 <actions>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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9 <action type="setup_python_environment">
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10 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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dd8ace13f3aa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 999fd0b109aae24b72ce5791b7965941e9b2a19a
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11 <package name="python" version="2.7.10" />
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d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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12 </repository>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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13 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
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14 <package md5sum="b1ae2a8ec3c6d20be30b2bc1aa995bbf">https://pypi.python.org/packages/source/p/pysam/pysam-0.8.3.tar.gz</package>
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d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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15 </action>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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16 <action type="set_environment">
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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17 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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18 <environment_variable action="set_to" name="PYTHONPATH_PYSAM">$INSTALL_DIR</environment_variable>
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d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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19 <environment_variable action="set_to" name="PATH_PYSAM">$INSTALL_DIR/bin</environment_variable>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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20 <environment_variable action="set_to" name="PYSAM_ROOT_DIR">$INSTALL_DIR</environment_variable>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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21 </action>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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22 </actions>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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23 </install>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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24 <readme>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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25 Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH.
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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26 </readme>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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27 </package>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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28 </tool_dependency>