Mercurial > repos > iuc > package_python_2_7_pysam_0_8_3

annotate tool_dependencies.xml @ 0:d2acc22011f9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
author iuc
date Sun, 17 May 2015 14:58:02 -0400
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children 822a4874521b
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d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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1 <?xml version="1.0"?>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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2 <tool_dependency>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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3 <package name="python" version="2.7">
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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4 <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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5 </package>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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6 <package name="pysam" version="0.8.3">
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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7 <install version="1.0">
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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8 <actions>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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9 <action type="setup_python_environment">
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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10 <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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11 <package name="python" version="2.7" />
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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12 </repository>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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13 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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14 <package>https://pypi.python.org/packages/source/p/pysam/pysam-0.8.3.tar.gz</package>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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15 </action>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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16
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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17 <action type="set_environment">
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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18 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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19 <environment_variable action="set_to" name="PYTHONPATH_PYSAM">$INSTALL_DIR/lib/python</environment_variable>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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20 <environment_variable action="set_to" name="PATH_PYSAM">$INSTALL_DIR/bin</environment_variable>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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21 <environment_variable action="set_to" name="PYSAM_ROOT_DIR">$INSTALL_DIR</environment_variable>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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22 </action>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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23 </actions>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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24 </install>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
iuc
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25 <readme>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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26 Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH.
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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27 </readme>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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28 </package>
d2acc22011f9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 5a986267144da2093f820e1833325fd3d5902c7d-dirty
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29 </tool_dependency>