Mercurial > repos > iuc > package_python_2_7_pybedtools_0_7_4

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pybedtools_0_7_4 commit eba0605827715aad9656b8aad60c73d4ccff9965
author iuc
date Fri, 18 Dec 2015 02:34:33 -0500
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children df0e395fcf01
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-1:000000000000 0:0d01b5a55af9
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="tabix" version="0.2.6">
4 <repository changeset_revision="54f8b9bf9b6c" name="package_tabix_0_2_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="samtools" version="0.1.19">
7 <repository changeset_revision="0e56e4dac6e7" name="package_samtools_0_1_19" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="bedtools" version="2.24">
10 <repository changeset_revision="e6f4a7398a47" name="package_bedtools_2_24" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="cython" version="0.20.1">
13 <repository changeset_revision="749f11b9358a" name="package_cython_0_20_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="pybedtools" version="0.7.4">
16 <install version="1.0">
17 <actions>
18 <action type="setup_python_environment">
19 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
20 <package name="python" version="2.7.10" />
21 </repository>
22 <repository changeset_revision="749f11b9358a" name="package_cython_0_20_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
23 <package name="cython" version="0.20.1" />
24 </repository>
25 <package sha256sum="15cfae9e8a207ded403ad9fa2e77f09d14c2fe377d1bc5f8b063647e2d0554e0">https://depot.galaxyproject.org/software/pybedtools/pybedtools_0.7.4_src_all.tar.gz</package>
26 </action>
27
28 <action type="set_environment">
29 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
30 </action>
31 </actions>
32 </install>
33 <readme>Compiling pybedtools requires cython and the gcc compiler.
34 https://github.com/daler/pybedtools
35 </readme>
36 </package>
37 </tool_dependency>