Mercurial > repos > iuc > package_python_2_7_pybedtools_0_7_4

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pybedtools_0_7_4 commit 894a511924a94a46aa70063cfebec5e4dca0933c
author iuc
date Fri, 18 Dec 2015 05:04:26 -0500
parents 0d01b5a55af9
children c763d117e75a
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<?xml version="1.0"?>
<tool_dependency>
    <package name="tabix" version="0.2.6">
        <repository changeset_revision="54f8b9bf9b6c" name="package_tabix_0_2_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="samtools" version="0.1.19">
        <repository changeset_revision="0e56e4dac6e7" name="package_samtools_0_1_19" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="bedtools" version="2.24">
        <repository changeset_revision="e6f4a7398a47" name="package_bedtools_2_24" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="cython" version="0.20.1">
        <repository changeset_revision="749f11b9358a" name="package_cython_0_20_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="pybedtools" version="0.7.4">
        <install version="1.0">
            <actions>
                <action type="setup_python_environment">
                    <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="python" version="2.7.10" />
                    </repository>
                    <repository changeset_revision="749f11b9358a" name="package_cython_0_20_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="cython" version="0.20.1" />
                    </repository>
                    <package sha256sum="e24052411fc4fbd1f672635537c3fc2330d9481b18c0317695b46259512c91d5">
                        https://depot.galaxyproject.org/software/six/six_1.9.0_src_all.tar.gz
                    </package>
                    <package sha256sum="15cfae9e8a207ded403ad9fa2e77f09d14c2fe377d1bc5f8b063647e2d0554e0">
                        https://depot.galaxyproject.org/software/pybedtools/pybedtools_0.7.4_src_all.tar.gz
                    </package>
                </action>

                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Compiling pybedtools requires cython and the gcc compiler.
            https://github.com/daler/pybedtools
        </readme>
    </package>
</tool_dependency>