Mercurial > repos > iuc > package_python_2_7_msproteomicstools_0_3_2

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_msproteomicstools_0_3_2 commit ceaef1a06c8600f9a042fc8f80f5b3fae75d4445-dirty
author galaxyp
date Sat, 30 May 2015 05:29:41 -0400
parents 4381e493affd
children
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="numpy" version="1.9">
2
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4 <repository changeset_revision="75990fbcd389" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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28ff01781dfb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_msproteomicstools_0_3_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
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5 </package>
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6 <package name="scipy" version="0.14">
2
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7 <repository changeset_revision="eaf37c2ff694" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="libxslt" version="1.1.28">
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10 <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
28ff01781dfb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_msproteomicstools_0_3_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
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11 </package>
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12 <package name="python" version="2.7">
2
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13 <repository changeset_revision="92611fea803c" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="libxml2" version="2.9.1">
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16 <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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17 </package>
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18 <package name="msproteomicstools" version="0.3.2">
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19 <install version="1.0">
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20 <actions>
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21 <action type="setup_python_environment">
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22 <repository changeset_revision="92611fea803c" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
1
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23 <package name="python" version="2.7" />
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24 </repository>
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25 <repository changeset_revision="75990fbcd389" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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26 <package name="numpy" version="1.9" />
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27 </repository>
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28 <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
28ff01781dfb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_msproteomicstools_0_3_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
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29 <package name="libxml2" version="2.9.1" />
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30 </repository>
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31 <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
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32 <package name="libxslt" version="1.1.28" />
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33 </repository>
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34 <repository changeset_revision="eaf37c2ff694" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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35 <package name="scipy" version="0.14" />
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36 </repository>
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37 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
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38 <package>https://pypi.python.org/packages/source/l/lxml/lxml-3.4.1.tar.gz</package>
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39 <package>https://pypi.python.org/packages/source/x/xlwt/xlwt-0.7.5.tar.gz</package>
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40 <package>https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.7.3.tar.gz#md5=090a2d2b0c3c654ba44954be29306371</package>
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41 <package>https://pypi.python.org/packages/source/s/scikits.datasmooth/scikits.datasmooth-0.61.tar.gz</package>
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42 <package>https://pypi.python.org/packages/source/p/pyteomics/pyteomics-2.5.5.tar.gz</package>
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43 <package>https://pypi.python.org/packages/source/c/cluster/cluster-1.1.2.tar.gz</package>
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44 <package>https://pypi.python.org/packages/source/c/cvxopt/cvxopt-1.1.7.tar.gz#md5=5b80f5382bb638e606e486ee39bc93b4</package>
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45 <package>https://pypi.python.org/packages/source/c/configobj/configobj-4.7.2.tar.gz</package>
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46 <package>https://pypi.python.org/packages/source/m/msproteomicstools/msproteomicstools-0.3.2.tar.gz</package>
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47 </action>
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48 <action type="set_environment">
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49 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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50 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
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51 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_PANDAS]</environment_variable>
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52 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
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53 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
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54 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]/atlas</environment_variable>
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55 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
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56 <environment_variable action="set_to" name="MSPROTEOMICSTOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
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57 </action>
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58 </actions>
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59 </install>
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60 <readme>Installing msproteomicstools.</readme>
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61 </package>
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62 </tool_dependency>