Mercurial > repos > iuc > package_python_2_7_msproteomicstools_0_3_2

diff tool_dependencies.xml @ 0:28ff01781dfb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_msproteomicstools_0_3_2 commit d58be130a759575f477a18db6ec86b1ee55c805a-dirty
author iuc
date Sun, 17 May 2015 15:06:57 -0400
parents
children 4381e493affd
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sun May 17 15:06:57 2015 -0400
@@ -0,0 +1,61 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="numpy" version="1.9">
+       <repository changeset_revision="a095a5975d3a" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="scipy" version="0.14">
+       <repository changeset_revision="8d22fd5a704c" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="libxslt" version="1.1.28">
+       <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="python" version="2.7">
+        <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="libxml2" version="2.9.1">
+        <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="msproteomicstools" version="0.3.2">
+        <install version="1.0">
+            <actions>
+                <!-- populate the environment variables from the dependend repos -->
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="a095a5975d3a" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="numpy" version="1.9" />
+                    </repository>
+                    <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="libxml2" version="2.9.1" />
+                    </repository>
+                    <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="libxslt" version="1.1.28" />
+                    </repository>
+                    <repository changeset_revision="8d22fd5a704c" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="scipy" version="0.14" />
+                    </repository>
+                </action>
+                <action type="setup_python_environment">
+                   <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                       <package name="python" version="2.7" />
+                   </repository>
+                    <!-- allow downloading and installing an Python package from https://pypi.org/ -->
+                    <package>https://pypi.python.org/packages/source/l/lxml/lxml-3.4.1.tar.gz</package>
+                    <package>https://pypi.python.org/packages/source/x/xlwt/xlwt-0.7.5.tar.gz</package>
+                    <package>https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.7.3.tar.gz#md5=090a2d2b0c3c654ba44954be29306371</package>
+                    <package>https://pypi.python.org/packages/source/s/scikits.datasmooth/scikits.datasmooth-0.61.tar.gz</package>
+                    <package>https://pypi.python.org/packages/source/p/pyteomics/pyteomics-2.5.5.tar.gz</package>
+                    <package>https://pypi.python.org/packages/source/c/cluster/cluster-1.2.2.tar.gz</package>
+                    <package>https://pypi.python.org/packages/source/m/msproteomicstools/msproteomicstools-0.3.2.tar.gz</package>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_PANDAS]</environment_variable>
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
+                    <environment_variable action="set_to" name="MSPROTEOMICSTOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>Installing msproteomicstools.</readme>
+    </package>
+</tool_dependency>