Mercurial > repos > iuc > package_python_2_7_deeptools_2_3_3

annotate tool_dependencies.xml @ 0:b24e063c73ea draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
author iuc
date Fri, 12 Aug 2016 05:07:56 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
2 <tool_dependency>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
3 <package name="numpy" version="1.9">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
4 <repository changeset_revision="5f2b261ffc5b" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
5 </package>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
6 <package name="pybigwig" version="0.2.8">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
7 <repository changeset_revision="a75cebd721fd" name="package_python_2_7_10_pybigwig_0_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
8 </package>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
9 <package name="matplotlib" version="1.4">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
10 <repository changeset_revision="9a4214646e88" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
11 </package>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
12 <package name="scipy" version="0.14">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
13 <repository changeset_revision="1481a40ab1d1" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
14 </package>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
15 <package name="pysam" version="0.8.3">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
16 <repository changeset_revision="7ac80143c68d" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
17 </package>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
18 <package name="python" version="2.7.10">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
19 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
20 </package>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
21 <package name="deepTools" version="2.3.3">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
22 <install version="1.0">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
23 <actions>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
24 <action type="setup_python_environment">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
25 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
26 <package name="python" version="2.7.10" />
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
27 </repository>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
28 <repository changeset_revision="7ac80143c68d" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
29 <package name="pysam" version="0.8.3" />
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
30 </repository>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
31 <repository changeset_revision="5f2b261ffc5b" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
32 <package name="numpy" version="1.9" />
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
33 </repository>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
34 <repository changeset_revision="9a4214646e88" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
35 <package name="matplotlib" version="1.4" />
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
36 </repository>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
37 <repository changeset_revision="1481a40ab1d1" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
38 <package name="scipy" version="0.14" />
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
39 </repository>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
40 <repository changeset_revision="a75cebd721fd" name="package_python_2_7_10_pybigwig_0_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
41 <package name="pybigwig" version="0.2.8" />
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
42 </repository>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
43 <package sha256sum="047511c9a6231207fa6ee49f901f9afa0f81c57e4bc03840392e48ed67d97203">https://pypi.python.org/packages/c1/03/982c3656e85e6f264b37d5f6e594d030d6dd99064913eb423d2b40fcebe3/deepTools-2.3.3.tar.gz</package>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
44 </action>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
45
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
46 <action type="set_environment">
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
47 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
48 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
49 <environment_variable action="set_to" name="DEEPTOOLS_ROOT_PATH">$INSTALL_DIR</environment_variable>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
50 <environment_variable action="set_to" name="DEEPTOOLS_PYTHONPATH">$INSTALL_DIR</environment_variable>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
51 <environment_variable action="set_to" name="DEEPTOOLS_PATH">$INSTALL_DIR/bin</environment_variable>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
52 <!-- libpng lib path -->
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
53 <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
54 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
55 <!-- disable the config file of deepTools -->
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
56 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
57 </action>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
58 </actions>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
59 </install>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
60 <readme>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
61 Installation of deepTools from Fidel Ramirez.
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
62 https://github.com/fidelram/deepTools
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
63 </readme>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
64 </package>
b24e063c73ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
iuc
parents:
diff changeset
65 </tool_dependency>