Mercurial > repos > iuc > package_python_2_7_deeptools_2_0

diff tool_dependencies.xml @ 4:52381820a4de draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
author iuc
date Tue, 19 Jan 2016 09:27:13 -0500
parents bd40c0aa7d8e
children 1702876fa731
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Dec 22 19:30:44 2015 -0500
+++ b/tool_dependencies.xml	Tue Jan 19 09:27:13 2016 -0500
@@ -1,64 +1,52 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="samtools" version="0.1.19">
-        <repository changeset_revision="786e3000ca58" name="package_samtools_0_1_19" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="numpy" version="1.9">
+        <repository changeset_revision="3f5ed97e31de" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="pybigwig" version="0.1.9">
-        <repository changeset_revision="1608b20797bc" name="package_python_2_7_10_pybigwig_0_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="numpy" version="1.9">
-        <repository changeset_revision="88d3bc8da3d9" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="pybigwig" version="0.2.3">
+        <repository changeset_revision="c75e2891e98d" name="package_python_2_7_10_pybigwig_0_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="matplotlib" version="1.4">
-        <repository changeset_revision="7f9e94628d10" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="9a4214646e88" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="scipy" version="0.14">
-        <repository changeset_revision="fe627de3acd5" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="1481a40ab1d1" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="pysam" version="0.8.3">
-        <repository changeset_revision="f88a5f4ac6c1" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="7ac80143c68d" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="bx-python" version="0.7.2">
         <repository changeset_revision="d8a6fe09ae80" name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="ucsc_tools" version="312">
-        <repository changeset_revision="ceda74761368" name="package_ucsc_tools_312" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
     <package name="python" version="2.7.10">
         <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="deepTools" version="2.0">
+    <package name="deepTools" version="1.5.11">
         <install version="1.0">
             <actions>
                 <action type="setup_python_environment">
                     <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="python" version="2.7.10" />
                     </repository>
-                    <repository changeset_revision="f88a5f4ac6c1" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="7ac80143c68d" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="pysam" version="0.8.3" />
                     </repository>
-                    <repository changeset_revision="88d3bc8da3d9" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="3f5ed97e31de" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="numpy" version="1.9" />
                     </repository>
-                    <repository changeset_revision="7f9e94628d10" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="9a4214646e88" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="matplotlib" version="1.4" />
                     </repository>
-                    <repository changeset_revision="fe627de3acd5" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="1481a40ab1d1" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="scipy" version="0.14" />
                     </repository>
                     <repository changeset_revision="d8a6fe09ae80" name="package_python_2_7_bx_python_0_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="bx-python" version="0.7.2" />
                     </repository>
-                    <repository changeset_revision="786e3000ca58" name="package_samtools_0_1_19" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
-                        <package name="samtools" version="0.1.19" />
+                    <repository changeset_revision="c75e2891e98d" name="package_python_2_7_10_pybigwig_0_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="pybigwig" version="0.2.3" />
                     </repository>
-                    <repository changeset_revision="ceda74761368" name="package_ucsc_tools_312" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
-                        <package name="ucsc_tools" version="312" />
-                    </repository>
-                    <repository changeset_revision="1608b20797bc" name="package_python_2_7_10_pybigwig_0_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
-                        <package name="pybigwig" version="0.1.9" />
-                    </repository>
-                    <package>https://github.com/fidelram/deepTools/archive/release-1.6.zip</package>
+                    <package>https://github.com/fidelram/deepTools/archive/master.tar.gz</package>
                 </action>
 
                 <action type="set_environment">