Mercurial > repos > iuc > package_python_2_7_deeptools_2_0

comparison tool_dependencies.xml @ 4:52381820a4de draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
author iuc
date Tue, 19 Jan 2016 09:27:13 -0500
parents bd40c0aa7d8e
children 1702876fa731
comparison
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3:bd40c0aa7d8e 4:52381820a4de
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="samtools" version="0.1.19"> 3 <package name="numpy" version="1.9">
4 <repository changeset_revision="786e3000ca58" name="package_samtools_0_1_19" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="3f5ed97e31de" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="pybigwig" version="0.1.9"> 6 <package name="pybigwig" version="0.2.3">
7 <repository changeset_revision="1608b20797bc" name="package_python_2_7_10_pybigwig_0_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="c75e2891e98d" name="package_python_2_7_10_pybigwig_0_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="numpy" version="1.9">
10 <repository changeset_revision="88d3bc8da3d9" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package> 8 </package>
12 <package name="matplotlib" version="1.4"> 9 <package name="matplotlib" version="1.4">
13 <repository changeset_revision="7f9e94628d10" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="9a4214646e88" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package> 11 </package>
15 <package name="scipy" version="0.14"> 12 <package name="scipy" version="0.14">
16 <repository changeset_revision="fe627de3acd5" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="1481a40ab1d1" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17 </package> 14 </package>
18 <package name="pysam" version="0.8.3"> 15 <package name="pysam" version="0.8.3">
19 <repository changeset_revision="f88a5f4ac6c1" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="7ac80143c68d" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
20 </package> 17 </package>
21 <package name="bx-python" version="0.7.2"> 18 <package name="bx-python" version="0.7.2">
22 <repository changeset_revision="d8a6fe09ae80" name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 19 <repository changeset_revision="d8a6fe09ae80" name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
23 </package> 20 </package>
24 <package name="ucsc_tools" version="312">
25 <repository changeset_revision="ceda74761368" name="package_ucsc_tools_312" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
26 </package>
27 <package name="python" version="2.7.10"> 21 <package name="python" version="2.7.10">
28 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 22 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
29 </package> 23 </package>
30 <package name="deepTools" version="2.0"> 24 <package name="deepTools" version="1.5.11">
31 <install version="1.0"> 25 <install version="1.0">
32 <actions> 26 <actions>
33 <action type="setup_python_environment"> 27 <action type="setup_python_environment">
34 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 28 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
35 <package name="python" version="2.7.10" /> 29 <package name="python" version="2.7.10" />
36 </repository> 30 </repository>
37 <repository changeset_revision="f88a5f4ac6c1" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 31 <repository changeset_revision="7ac80143c68d" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
38 <package name="pysam" version="0.8.3" /> 32 <package name="pysam" version="0.8.3" />
39 </repository> 33 </repository>
40 <repository changeset_revision="88d3bc8da3d9" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 34 <repository changeset_revision="3f5ed97e31de" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
41 <package name="numpy" version="1.9" /> 35 <package name="numpy" version="1.9" />
42 </repository> 36 </repository>
43 <repository changeset_revision="7f9e94628d10" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 37 <repository changeset_revision="9a4214646e88" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
44 <package name="matplotlib" version="1.4" /> 38 <package name="matplotlib" version="1.4" />
45 </repository> 39 </repository>
46 <repository changeset_revision="fe627de3acd5" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 40 <repository changeset_revision="1481a40ab1d1" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
47 <package name="scipy" version="0.14" /> 41 <package name="scipy" version="0.14" />
48 </repository> 42 </repository>
49 <repository changeset_revision="d8a6fe09ae80" name="package_python_2_7_bx_python_0_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 43 <repository changeset_revision="d8a6fe09ae80" name="package_python_2_7_bx_python_0_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
50 <package name="bx-python" version="0.7.2" /> 44 <package name="bx-python" version="0.7.2" />
51 </repository> 45 </repository>
52 <repository changeset_revision="786e3000ca58" name="package_samtools_0_1_19" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu"> 46 <repository changeset_revision="c75e2891e98d" name="package_python_2_7_10_pybigwig_0_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
53 <package name="samtools" version="0.1.19" /> 47 <package name="pybigwig" version="0.2.3" />
54 </repository> 48 </repository>
55 <repository changeset_revision="ceda74761368" name="package_ucsc_tools_312" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 49 <package>https://github.com/fidelram/deepTools/archive/master.tar.gz</package>
56 <package name="ucsc_tools" version="312" />
57 </repository>
58 <repository changeset_revision="1608b20797bc" name="package_python_2_7_10_pybigwig_0_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
59 <package name="pybigwig" version="0.1.9" />
60 </repository>
61 <package>https://github.com/fidelram/deepTools/archive/release-1.6.zip</package>
62 </action> 50 </action>
63 51
64 <action type="set_environment"> 52 <action type="set_environment">
65 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 53 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
66 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> 54 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>