annotate tool_dependencies.xml @ 3:bd40c0aa7d8e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
author iuc
date Tue, 22 Dec 2015 19:30:44 -0500
parents 747571992679
children 52381820a4de
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1 <?xml version="1.0"?>
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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2 <tool_dependency>
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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3 <package name="samtools" version="0.1.19">
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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4 <repository changeset_revision="786e3000ca58" name="package_samtools_0_1_19" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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5 </package>
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6 <package name="pybigwig" version="0.1.9">
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8 </package>
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9 <package name="numpy" version="1.9">
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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11 </package>
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12 <package name="matplotlib" version="1.4">
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14 </package>
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15 <package name="scipy" version="0.14">
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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17 </package>
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18 <package name="pysam" version="0.8.3">
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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20 </package>
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23 </package>
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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24 <package name="ucsc_tools" version="312">
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26 </package>
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27 <package name="python" version="2.7.10">
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29 </package>
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30 <package name="deepTools" version="2.0">
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31 <install version="1.0">
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32 <actions>
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33 <action type="setup_python_environment">
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35 <package name="python" version="2.7.10" />
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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36 </repository>
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38 <package name="pysam" version="0.8.3" />
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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39 </repository>
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41 <package name="numpy" version="1.9" />
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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42 </repository>
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44 <package name="matplotlib" version="1.4" />
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45 </repository>
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47 <package name="scipy" version="0.14" />
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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48 </repository>
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50 <package name="bx-python" version="0.7.2" />
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51 </repository>
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53 <package name="samtools" version="0.1.19" />
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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54 </repository>
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56 <package name="ucsc_tools" version="312" />
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57 </repository>
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59 <package name="pybigwig" version="0.1.9" />
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60 </repository>
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61 <package>https://github.com/fidelram/deepTools/archive/release-1.6.zip</package>
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62 </action>
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64 <action type="set_environment">
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65 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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66 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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67 <environment_variable action="set_to" name="DEEPTOOLS_ROOT_PATH">$INSTALL_DIR</environment_variable>
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68 <environment_variable action="set_to" name="DEEPTOOLS_PYTHONPATH">$INSTALL_DIR</environment_variable>
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69 <environment_variable action="set_to" name="DEEPTOOLS_PATH">$INSTALL_DIR/bin</environment_variable>
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70 <!-- libpng lib path -->
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71 <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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72 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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73 <!-- disable the config file of deepTools -->
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74 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable>
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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75 </action>
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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76 </actions>
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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77 </install>
bb4b8de27d18 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_0 commit b425efed2d6fe1952e365cad3e0c99b3388704ba
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78 <readme>
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79 Installation of deepTools from Fidel Ramirez.
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80 https://github.com/fidelram/deepTools
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81 </readme>
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82 </package>
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83 </tool_dependency>