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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="peptide_shaker" version="0.37">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://genesis.ugent.be/maven2/eu/isas/peptideshaker/PeptideShaker/0.37.4/PeptideShaker-0.37.4.zip</action>
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7 <action type="shell_command">chmod -R o+w resources</action>
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8 <action type="move_directory_files">
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9 <source_directory>.</source_directory>
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10 <destination_directory>$INSTALL_DIR/</destination_directory>
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11 </action>
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12 <action type="set_environment">
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13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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14 <environment_variable name="PEPTIDESHAKER_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
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15 <environment_variable name="PEPTIDESHAKER_JAR_PATH" action="set_to">$INSTALL_DIR/PeptideShaker-0.37.4.jar</environment_variable>
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16 </action>
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17 </actions>
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18 </install>
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19 <readme>
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20 Install Galaxy package application for PeptideShaker 0.37.4.
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21 http://peptide-shaker.googlecode.com
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22 </readme>
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23 </package>
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24 </tool_dependency>
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