Mercurial > repos > iuc > package_openbabel_2_3
annotate tool_dependencies.xml @ 3:02102db6f1b9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_openbabel_2_3 commit 97a064489364118d108b0dd2cfb4d9bc53080837
| author | iuc |
|---|---|
| date | Thu, 19 Nov 2015 13:48:46 -0500 |
| parents | ac9bf7ac1281 |
| children | 4ec0d9c57ddd |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="eigen3" version="3.1.3"> | |
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02102db6f1b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_openbabel_2_3 commit 97a064489364118d108b0dd2cfb4d9bc53080837
iuc
parents:
2
diff
changeset
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4 <repository changeset_revision="43f1ac6314d1" name="package_eigen_3_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 5 </package> |
| 6 <package name="openbabel" version="2.3.2"> | |
| 7 <install version="1.0"> | |
| 8 <actions> | |
| 9 <action type="download_by_url">http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz</action> | |
| 10 | |
| 11 <!-- populate the environment variables from the dependend repos --> | |
| 12 <action type="set_environment_for_install"> | |
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02102db6f1b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_openbabel_2_3 commit 97a064489364118d108b0dd2cfb4d9bc53080837
iuc
parents:
2
diff
changeset
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13 <repository changeset_revision="43f1ac6314d1" name="package_eigen_3_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 14 <package name="eigen3" version="3.1.3" /> |
| 15 </repository> | |
| 16 </action> | |
| 17 | |
| 18 <!-- | |
| 19 Huge hack, to point to the actual python lib path. Cmake gets confused with mixed python versions (2.x and 3.x) and we need to point explicitely to the recent version. | |
| 20 --> | |
| 21 <action type="shell_command">cmake . -DPYTHON_BINDINGS=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DEIGEN3_INCLUDE_DIR=$EIGEN3_SOURCE_PATH -DPYTHON_LIBRARY=`python -c 'import distutils.sysconfig; print "%s/libpython%s.so" % (distutils.sysconfig.get_config_var("LIBPL"), distutils.sysconfig.get_python_version())'`</action> | |
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02102db6f1b9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_openbabel_2_3 commit 97a064489364118d108b0dd2cfb4d9bc53080837
iuc
parents:
2
diff
changeset
|
22 <action type="make_install" /> |
| 0 | 23 <action type="set_environment"> |
| 24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 25 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable> | |
| 26 <!-- internal variables for open babel --> | |
| 27 <environment_variable action="set_to" name="BABEL_DATADIR">$INSTALL_DIR/share/openbabel</environment_variable> | |
| 28 <environment_variable action="set_to" name="BABEL_LIBDIR">$INSTALL_DIR/lib/openbabel/2.3.2</environment_variable> | |
| 29 <!-- galaxy variables for other tool wrappers --> | |
| 30 <environment_variable action="set_to" name="OPENBABEL_LIB_DIR">$INSTALL_DIR/lib</environment_variable> | |
| 31 <environment_variable action="set_to" name="OPENBABEL_INCLUDE_DIR">$INSTALL_DIR/include</environment_variable> | |
| 2 | 32 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable> |
| 33 <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable> | |
| 34 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable> | |
| 0 | 35 </action> |
| 36 </actions> | |
| 37 </install> | |
| 38 <readme>Compiling OpenBabel requires g++ and CMake 2.4+. Optional but required for a few features are the cairo development libraries. OPENBABEL_INCLUDE_DIR and OPENBABEL_LIB_DIR can be accessed from other tool wrappers.</readme> | |
| 39 </package> | |
| 40 </tool_dependency> |