Mercurial > repos > iuc > package_numpy_1_7_with_atlas
annotate tool_dependencies.xml @ 3:af437a75bfde draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_7_with_atlas commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
| author | iuc |
|---|---|
| date | Tue, 22 Dec 2015 19:25:28 -0500 |
| parents | 09a475799572 |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="lapack" version="3.4.2"> | |
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af437a75bfde
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_7_with_atlas commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
2
diff
changeset
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4 <repository changeset_revision="b5caa0c1be7b" name="package_lapack_3_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 5 </package> |
| 6 <package name="atlas" version="3.10.1"> | |
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09a475799572
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_7_with_atlas commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
1
diff
changeset
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7 <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 8 </package> |
| 9 <package name="numpy" version="1.7.1"> | |
| 10 <install version="1.0"> | |
| 11 <actions> | |
| 12 <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.7.1.tar.gz</action> | |
| 13 <action type="set_environment_for_install"> | |
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2
09a475799572
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_7_with_atlas commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
1
diff
changeset
|
14 <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 15 <package name="atlas" version="3.10.1" /> |
| 16 </repository> | |
|
3
af437a75bfde
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_7_with_atlas commit bd736b6361ba659a1251dd1a1a05f7e3b633bdf5
iuc
parents:
2
diff
changeset
|
17 <repository changeset_revision="b5caa0c1be7b" name="package_lapack_3_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 18 <package name="lapack" version="3.4.2" /> |
| 19 </repository> | |
| 20 </action> | |
| 21 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
| 22 <action language="cheetah" type="template_command"> | |
| 23 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python && | |
| 24 | |
| 25 #if env.get('ATLAS_LIB_DIR', False): | |
| 26 export ATLAS=$env.ATLAS_LIB_DIR/libatlas.a && | |
| 27 #end if | |
| 28 #if env.get('LAPACK_LIB_DIR', False): | |
| 29 export BLAS=$env.LAPACK_LIB_DIR/libblas.a && | |
| 30 export LAPACK=$env.LAPACK_LIB_DIR/liblapack.a && | |
| 31 #end if | |
| 32 python setup.py install --install-lib $env.INSTALL_DIR/lib/python --install-scripts $env.INSTALL_DIR/bin | |
| 33 </action> | |
| 34 <action type="set_environment"> | |
| 35 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
| 36 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 37 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable> | |
| 38 <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable> | |
| 39 </action> | |
| 40 </actions> | |
| 41 </install> | |
| 42 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme> | |
| 43 </package> | |
| 44 </tool_dependency> |