|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="numpy" version="1.9">
|
|
1
|
4 <repository changeset_revision="266529386609" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
0
|
5 </package>
|
|
|
6 <package name="scipy" version="0.14">
|
|
1
|
7 <repository changeset_revision="2e3809844979" name="package_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
0
|
8 </package>
|
|
2
|
9 <package name="libxslt" version="1.1.28">
|
|
|
10 <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
|
11 </package>
|
|
0
|
12 <package name="python" version="2.7">
|
|
3
|
13 <repository changeset_revision="9e1a21a066d4" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
1
|
14 </package>
|
|
|
15 <package name="libxml2" version="2.9.1">
|
|
|
16 <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
|
|
0
|
17 </package>
|
|
|
18 <package name="msproteomicstools" version="0.3.2">
|
|
|
19 <install version="1.0">
|
|
|
20 <actions>
|
|
|
21 <!-- populate the environment variables from the dependend repos -->
|
|
|
22 <action type="set_environment_for_install">
|
|
1
|
23 <repository changeset_revision="ef98e20431a7" name="package_pandas_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
0
|
24 <package name="pandas" version="0.14" />
|
|
|
25 </repository>
|
|
1
|
26 <repository changeset_revision="266529386609" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
0
|
27 <package name="numpy" version="1.9" />
|
|
|
28 </repository>
|
|
1
|
29 <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
30 <package name="libxml2" version="2.9.1" />
|
|
|
31 </repository>
|
|
2
|
32 <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
|
33 <package name="libxslt" version="1.1.28" />
|
|
|
34 </repository>
|
|
1
|
35 <repository changeset_revision="2e3809844979" name="package_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
0
|
36 <package name="scipy" version="0.14" />
|
|
|
37 </repository>
|
|
|
38 </action>
|
|
|
39 <action type="setup_python_environment">
|
|
3
|
40 <repository changeset_revision="9e1a21a066d4" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
|
|
0
|
41 <package name="python" version="2.7" />
|
|
|
42 </repository>
|
|
|
43 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
|
|
|
44 <package>https://pypi.python.org/packages/source/l/lxml/lxml-3.4.1.tar.gz</package>
|
|
|
45 <package>https://pypi.python.org/packages/source/x/xlwt/xlwt-0.7.5.tar.gz</package>
|
|
3
|
46 <package>https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.7.3.tar.gz#md5=090a2d2b0c3c654ba44954be29306371</package>
|
|
0
|
47 <package>https://pypi.python.org/packages/source/s/scikits.datasmooth/scikits.datasmooth-0.61.tar.gz</package>
|
|
|
48 <package>https://pypi.python.org/packages/source/p/pyteomics/pyteomics-2.5.5.tar.gz</package>
|
|
|
49 <package>https://pypi.python.org/packages/source/c/cluster/cluster-1.2.2.tar.gz</package>
|
|
|
50 <package>https://pypi.python.org/packages/source/m/msproteomicstools/msproteomicstools-0.3.2.tar.gz</package>
|
|
|
51 </action>
|
|
|
52 <action type="set_environment">
|
|
|
53 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
|
|
|
54 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
|
|
|
55 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
|
|
|
56 <environment_variable action="set_to" name="MSPROTEOMICSTOOLS_ROOT">$INSTALL_DIR</environment_variable>
|
|
|
57 </action>
|
|
|
58 </actions>
|
|
|
59 </install>
|
|
|
60 <readme>Installing msproteomicstools.</readme>
|
|
|
61 </package>
|
|
|
62 </tool_dependency>
|
