Mercurial > repos > iuc > package_morpheus_171
comparison tool_dependencies.xml @ 0:a8e9d3b708f2 draft default tip
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| author | iuc |
|---|---|
| date | Thu, 05 Nov 2015 08:51:23 -0500 |
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| -1:000000000000 | 0:a8e9d3b708f2 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="mono" version="4.0"> | |
| 4 <repository changeset_revision="d081ac7d12d1" name="package_mono_4_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="morpheus" version="171"> | |
| 7 <install version="1.0"> | |
| 8 <actions> | |
| 9 <action type="download_by_url">http://sourceforge.net/projects/morpheus-ms/files/revision%20171/Morpheus%20%28Linux%29.tar.gz</action> | |
| 10 <action type="set_environment_for_install"> | |
| 11 <repository changeset_revision="d081ac7d12d1" name="package_mono_4_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 12 <package name="mono" version="4.0" /> | |
| 13 </repository> | |
| 14 </action> | |
| 15 <action type="move_directory_files"> | |
| 16 <source_directory>Morpheus (Linux)</source_directory> | |
| 17 <destination_directory>$INSTALL_DIR/</destination_directory> | |
| 18 </action> | |
| 19 <action type="set_environment"> | |
| 20 <environment_variable action="set_to" name="MORPHEUS_PATH">$INSTALL_DIR</environment_variable> | |
| 21 <environment_variable action="prepend_to" name="PATH">$ENV[MONO_ROOT_PATH]/bin</environment_variable> | |
| 22 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[MONO_ROOT_PATH]/lib</environment_variable> | |
| 23 <environment_variable action="set_to" name="MONO_ROOT_PATH">$ENV[MONO_ROOT_PATH]</environment_variable> | |
| 24 </action> | |
| 25 </actions> | |
| 26 </install> | |
| 27 <readme> | |
| 28 Install Galaxy package application for Morpheus release 171 for use on linux | |
| 29 Must be executed with mono: | |
| 30 mono ${MORPHEUS_PATH}/morpheus_cl.exe -d input.mzML -db searchDB.fasta | |
| 31 http://morpheus-ms.sourceforge.net/ | |
| 32 </readme> | |
| 33 </package> | |
| 34 </tool_dependency> |