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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="mono" version="4.0">
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4 <repository changeset_revision="d081ac7d12d1" name="package_mono_4_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="morpheus" version="171">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">http://sourceforge.net/projects/morpheus-ms/files/revision%20171/Morpheus%20%28Linux%29.tar.gz</action>
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10 <action type="set_environment_for_install">
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11 <repository changeset_revision="d081ac7d12d1" name="package_mono_4_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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12 <package name="mono" version="4.0" />
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13 </repository>
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14 </action>
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15 <action type="move_directory_files">
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16 <source_directory>Morpheus (Linux)</source_directory>
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17 <destination_directory>$INSTALL_DIR/</destination_directory>
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18 </action>
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19 <action type="set_environment">
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20 <environment_variable action="set_to" name="MORPHEUS_PATH">$INSTALL_DIR</environment_variable>
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21 <environment_variable action="prepend_to" name="PATH">$ENV[MONO_ROOT_PATH]/bin</environment_variable>
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22 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[MONO_ROOT_PATH]/lib</environment_variable>
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23 <environment_variable action="set_to" name="MONO_ROOT_PATH">$ENV[MONO_ROOT_PATH]</environment_variable>
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24 </action>
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25 </actions>
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26 </install>
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27 <readme>
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28 Install Galaxy package application for Morpheus release 171 for use on linux
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29 Must be executed with mono:
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30 mono ${MORPHEUS_PATH}/morpheus_cl.exe -d input.mzML -db searchDB.fasta
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31 http://morpheus-ms.sourceforge.net/
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32 </readme>
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33 </package>
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34 </tool_dependency>
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