annotate tool_dependencies.xml @ 1:fd41eab672cd draft

Uploaded
author iuc
date Wed, 06 Jul 2016 10:19:45 -0400
parents f3b9f2cc6e2a
children 1d48f54bf1ea
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
2 <tool_dependency>
1
fd41eab672cd Uploaded
iuc
parents: 0
diff changeset
3 <package name="graphicsmagick" version="1.3.20">
fd41eab672cd Uploaded
iuc
parents: 0
diff changeset
4 <repository changeset_revision="25002de17a97" name="package_graphicsmagick_1_3_20" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
fd41eab672cd Uploaded
iuc
parents: 0
diff changeset
5 </package>
0
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
6 <package name="libxslt" version="1.1.28">
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
7 <repository changeset_revision="aee9e5c9ef2d" name="package_libxslt_1_1_28" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
8 </package>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
9 <package name="perl_xml_parser_expat" version="2.41">
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
10 <repository changeset_revision="54ddba4d0c4f" name="package_perl_xml_parser_expat_2_41" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
11 </package>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
12 <package name="meme" version="4.11.1">
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
13 <install version="1.0">
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
14 <actions>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
15 <action sha256sum="62602045b25c8422c59f441025b710629c2fbb602bf618fffeeab5654f521088" type="download_by_url">https://depot.galaxyproject.org/software/meme/meme_4.11.1_src_all.tar.gz</action>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
16 <action type="set_environment_for_install">
1
fd41eab672cd Uploaded
iuc
parents: 0
diff changeset
17 <repository changeset_revision="25002de17a97" name="package_graphicsmagick_1_3_20" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
fd41eab672cd Uploaded
iuc
parents: 0
diff changeset
18 <package name="graphicsmagick" version="1.3.20" />
fd41eab672cd Uploaded
iuc
parents: 0
diff changeset
19 </repository>
0
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
20 <repository changeset_revision="aee9e5c9ef2d" name="package_libxslt_1_1_28" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
21 <package name="libxslt" version="1.1.28" />
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
22 </repository>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
23 <repository changeset_revision="54ddba4d0c4f" name="package_perl_xml_parser_expat_2_41" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
24 <package name="perl_xml_parser_expat" version="2.41" />
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
25 </repository>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
26 </action>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
27 <action type="shell_command">
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
28 # Handle this bug: https://groups.google.com/forum/#!topic/meme-suite/rHmLmSt2IiQ
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
29 sed -i.bak -e 's|sprintf(evt_string, "%8g", dataset-&gt;evt)|sprintf(evt_string, "%g", dataset-&gt;evt)|' src/display.c
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
30 </action>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
31 <action type="autoconf" />
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
32 <action type="set_environment">
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
33 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
34 <environment_variable action="prepend_to" name="PERL5LIB">$ENV[PERL5LIB]</environment_variable>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
35 </action>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
36 </actions>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
37 </install>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
38 <readme>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
39 </readme>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
40 </package>
f3b9f2cc6e2a Uploaded
iuc
parents:
diff changeset
41 </tool_dependency>